.command.log - Workdir - NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (1029_8OI-T1-TDNA-1_A23NN2MLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/ed017dc880e6d3ed2a6cb567206ad5/.command.log
Size: 1.2 KB
Task: NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (1029_8OI-T1-TDNA-1_A23NN2MLT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/ed017dc880e6d3ed2a6cb567206ad5/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260424_LH00527_0077_A23NN2MLT4__c86dea0e--20260507-182003/alignments/recalibrated/1029_8OI-T1-TDNA-1_A23NN2MLT4_1/1029_8OI-T1-TDNA-1_A23NN2MLT4_1.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/ed017dc880e6d3ed2a6cb567206ad5/.command.run
ERROR "ls s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260424_LH00527_0077_A23NN2MLT4__c86dea0e--20260507-182003/alignments/recalibrated/1029_8OI-T1-TDNA-1_A23NN2MLT4_1/1029_8OI-T1-TDNA-1_A23NN2MLT4_1.recalibrated.bam.bai": no object found
ERROR "cp s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260424_LH00527_0077_A23NN2MLT4__c86dea0e--20260507-182003/alignments/recalibrated/1029_8OI-T1-TDNA-1_A23NN2MLT4_1/1029_8OI-T1-TDNA-1_A23NN2MLT4_1.recalibrated.bam.bai 1029_8OI-T1-TDNA-1_A23NN2MLT4_1.recalibrated.bam.bai": NoSuchKey: The specified key does not exist. status code: 404, request id: 0XFMS2RCT7Z7HZT7, host id: FzxTjK3e2/yc5i2lS1iv4uFPvi1KlSrTUbIYJHzege0s43JzV22Yd4n7Q1ScPTnmyfXQr89pBgp1UzOuEVftX7sSEddJ6fo546YH8AtMJ6U=