.command.log - Workdir - NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (1136_7H5-T1-TDNA-1_A23NN2MLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/e4b32903c74fa1889d0e79a67d7a08/.command.log
Size: 1.2 KB
Task: NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (1136_7H5-T1-TDNA-1_A23NN2MLT4_1)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260424_LH00527_0077_A23NN2MLT4__c86dea0e--20260507-182003/alignments/recalibrated/1136_7H5-T1-TDNA-1_A23NN2MLT4_1/1136_7H5-T1-TDNA-1_A23NN2MLT4_1.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/e4b32903c74fa1889d0e79a67d7a08/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/e4b32903c74fa1889d0e79a67d7a08/.command.run
ERROR "ls s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260424_LH00527_0077_A23NN2MLT4__c86dea0e--20260507-182003/alignments/recalibrated/1136_7H5-T1-TDNA-1_A23NN2MLT4_1/1136_7H5-T1-TDNA-1_A23NN2MLT4_1.recalibrated.bam.bai": no object found
ERROR "cp s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260424_LH00527_0077_A23NN2MLT4__c86dea0e--20260507-182003/alignments/recalibrated/1136_7H5-T1-TDNA-1_A23NN2MLT4_1/1136_7H5-T1-TDNA-1_A23NN2MLT4_1.recalibrated.bam.bai 1136_7H5-T1-TDNA-1_A23NN2MLT4_1.recalibrated.bam.bai": NoSuchKey: The specified key does not exist. status code: 404, request id: 3WQEBQ8W5PN9SHDP, host id: 7oecBihYCoFq6djdsIZppH8EEDSrxmMtJ6s028c28HbXpkywqg7F6G8uXGiFNHlLqXeNiLtOX4oXOt3Kove7kA==