1136_1RC-T1-TDNA-1_B23VCMYLT4_1_vs_1136_1RC-N1-BDNA-1_A23MHW3LT4_1.snv_indel.tmb.vars.txt

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Filename: 1136_1RC-T1-TDNA-1_B23VCMYLT4_1_vs_1136_1RC-N1-BDNA-1_A23MHW3LT4_1.snv_indel.tmb.vars.txt
Full Path: s3://natera-platform-sandbox/platform-users/sgreer/pipeline-output/low_input_study/tools__380c4714--20260529-041148/variant_calling/snv_indel/1136_1RC-T1-TDNA-1_B23VCMYLT4_1_vs_1136_1RC-N1-BDNA-1_A23MHW3LT4_1/1136_1RC-T1-TDNA-1_B23VCMYLT4_1_vs_1136_1RC-N1-BDNA-1_A23MHW3LT4_1.snv_indel.tmb.vars.txt
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Workflow Run: sarek-low-input-study-tools-20260529-041148
Published: May 29, 2026 9:49 AM
Content

CHROM,POS,REF,ALT,IMPACT,CONSEQUENCE,IS_NON_SYNONYMOUS,TUMOR_GT,NORMAL_GT,TUMOR_VAF
chr1,2028161,A,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.065600
chr1,19156811,C,A,HIGH,stop_gained,TRUE,0/1,0/0,0.150000
chr1,20353829,G,T,HIGH,stop_gained,TRUE,0/1,0/0,0.060300
chr1,23059111,A,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.462000
chr1,25835486,G,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.440000
chr1,169559156,GCATTGTCCCATTCACATATC,G,HIGH,frameshift_variant,TRUE,0/1,0/0,0.056800
chr1,173910824,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.251000
chr1,247758268,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.088300
chr2,74530947,G,T,MODERATE,missense_variant,TRUE,1|0,0/0,0.073400
chr2,140456469,A,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.065800
chr2,151610044,A,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.072700
chr2,154699080,G,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.051100
chr2,168932429,A,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.054300
chr2,178739940,G,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.053900
chr2,218960761,AC,A,HIGH,frameshift_variant,TRUE,0/1,0/0,0.085200
chr2,219235847,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.050400
chr2,219554592,G,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.192000
chr2,233823619,G,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.120000
chr3,51716033,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.511000
chr3,53091922,C,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.226000
chr3,69938048,A,G,MODERATE,missense_variant&splice_region_variant,TRUE,0|1,0/0,0.053400
chr3,119414864,G,T,HIGH,stop_gained,TRUE,0/1,0/0,0.187000
chr3,122700353,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.067200
chr3,130373702,C,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.068900
chr3,130566975,T,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.072500
chr3,134625120,C,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.055700
chr3,142426755,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.157000
chr3,169116591,AC,A,HIGH,frameshift_variant,TRUE,0/1,0/0,0.325800
chr3,193241295,C,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.071100
chr4,7729651,A,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.180000
chr4,99649853,G,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.058600
chr4,145886158,C,T,MODERATE,missense_variant&splice_region_variant,TRUE,0/1,0/0,0.136000
chr4,147879233,GC,G,HIGH,frameshift_variant&splice_region_variant,TRUE,0/1,0/0,0.145400
chr4,165297642,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.052500
chr5,10414478,A,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.051100
chr5,24509693,C,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.056900
chr5,74781597,TA,T,HIGH,frameshift_variant,TRUE,0/1,0/0,0.055900
chr5,141422843,G,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.095300
chr5,159269017,CCTTACAGGAGTT,C,MODERATE,inframe_deletion,TRUE,0/1,0/0,0.078100
chr6,32814365,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.115000
chr6,33455148,C,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.080000
chr6,105402868,G,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.052700
chr6,149632781,T,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.081000
chr6,152510334,G,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.211000
chr7,28809286,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.096700
chr7,44536860,C,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.071100
chr7,77779111,GCAACACAGTT,G,HIGH,frameshift_variant,TRUE,0/1,0/0,0.410000
chr7,128838355,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.069600
chr7,135395712,G,A,MODERATE,missense_variant,TRUE,1|0,0/0,0.552000
chr7,135395727,G,C,MODERATE,missense_variant,TRUE,1|0,0/0,0.548000
chr7,141972761,G,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.627000
chr7,151430055,T,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.056400
chr8,28033572,G,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.290000
chr8,55103192,G,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.110000
chr8,132836614,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.115000
chr9,19378861,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.078500
chr9,37493562,G,C,MODERATE,missense_variant,TRUE,1|0,0/0,0.081700
chr9,128250771,C,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.094400
chr9,128576934,G,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.194000
chr9,131061071,C,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.111000
chr9,135624369,GGGTCTCCACCCCGAACTCATTCTGGAAGACCT,G,HIGH,frameshift_variant,TRUE,0|1,0/0,0.054700
chr10,7964708,GC,AG,MODERATE,missense_variant,TRUE,0|1,0/0,0.064200
chr10,48201327,CTGTGACAAATG,C,HIGH,frameshift_variant,TRUE,0/1,0/0,0.064600
chr10,70566729,T,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.249000
chr10,85619916,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.054600
chr10,132808639,C,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.063000
chr10,133391312,C,G,MODERATE,missense_variant&splice_region_variant,TRUE,0|1,0/0,0.094600
chr11,294556,G,C,MODERATE,missense_variant&splice_region_variant,TRUE,0/1,0/0,0.142000
chr11,4821990,C,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.065400
chr11,17509691,C,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.060900
chr11,46796898,C,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.053900
chr11,55343495,C,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.107000
chr11,61258823,CTGGGGTCCATCA,C,MODERATE,inframe_deletion,TRUE,0|1,0/0,0.086900
chr11,62526695,G,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.084100
chr11,67645368,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.282000
chr11,78073052,CCCT,C,MODERATE,inframe_deletion,TRUE,0|1,0/0,0.051300
chr11,113909361,T,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.068900
chr12,8823349,A,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.106000
chr12,9196641,C,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.061500
chr12,54293131,TCTTGGAGCGGCTCACTGAGCAGGC,T,MODERATE,inframe_deletion,TRUE,0/1,0/0,0.083000
chr12,78007276,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.097100
chr12,109568782,C,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.196000
chr12,114403818,T,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.416000
chr12,119114349,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.052400
chr12,125653587,T,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.187000
chr13,19993526,GA,TT,MODERATE,missense_variant,TRUE,0/1,0/0,0.054000
chr13,113260664,G,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.068900
chr14,24157356,G,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.059000
chr14,44505309,T,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.051600
chr14,64449566,G,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.062200
chr14,64542521,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.134000
chr14,67794183,T,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.071300
chr14,69796836,A,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.097000
chr15,33853623,TGCTCTTGACTTTA,T,HIGH,frameshift_variant,TRUE,0|1,0/0,0.164100
chr15,43260450,T,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.063500
chr15,81333095,A,T,MODERATE,missense_variant,TRUE,1|0,0/0,0.245000
chr15,90241078,C,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.095500
chr16,4381409,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.052700
chr16,67945490,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.051900
chr17,1733772,C,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.088400
chr17,28912501,G,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.130000
chr17,37518994,C,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.068200
chr17,49224331,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.470000
chr17,61715955,C,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.400000
chr17,81229088,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.086900
chr18,10689753,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.115000
chr19,8731287,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.168000
chr19,10393261,C,G,MODERATE,missense_variant&splice_region_variant,TRUE,0/1,0/0,0.176000
chr19,36006793,CGGAAGAT,C,HIGH,frameshift_variant,TRUE,0/1,0/0,0.061700
chr19,36066275,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.081100
chr19,42765568,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.228000
chr19,51824508,T,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.056300
chr19,52880827,C,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.051200
chr19,53798259,T,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.294000
chr19,55761852,C,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.160000
chr20,9419857,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.073900
chr20,57604727,C,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.105000
chr21,38445459,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.057800
chr21,44440844,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.228000
chr22,31716772,G,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.152000
chr22,43889405,A,G,MODERATE,missense_variant,TRUE,1|0,0/0,0.124000
chrX,18180608,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.319000
chrX,18806505,C,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.087900
chrX,19369112,GGGCCTCCTGGC,G,HIGH,frameshift_variant,TRUE,0/1,0/0,0.094900
chrX,19373624,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.177000
chrX,57910162,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.112000
chrX,108061533,G,A,MODERATE,missense_variant&splice_region_variant,TRUE,0/1,0/0,0.212000