File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/1b72ff3175697976274e2efa2ecafb/.command.log
Size
1.2 KB
Task
NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT (1029_01F-T1-TDNA-1_B23VCL7LT4_1_vs_1029_01F-N1-BDNA-1_B23KFG5LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/43e3715215fdd1cab4f2df8068862f/1029_01F-T1-TDNA-1_B23VCL7LT4_1_vs_1029_01F-N1-BDNA-1_B23KFG5LT4_1.snv_indel.strelka.indel.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/3e80f1b26bf0e094bc6ff05e48142c/1029_01F-T1-TDNA-1_B23VCL7LT4_1_vs_1029_01F-N1-BDNA-1_B23KFG5LT4_1.snv_indel.tnseq.snv.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/1b72ff3175697976274e2efa2ecafb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/3e80f1b26bf0e094bc6ff05e48142c/1029_01F-T1-TDNA-1_B23VCL7LT4_1_vs_1029_01F-N1-BDNA-1_B23KFG5LT4_1.snv_indel.tnseq.snv.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/1b72ff3175697976274e2efa2ecafb/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/43e3715215fdd1cab4f2df8068862f/1029_01F-T1-TDNA-1_B23VCL7LT4_1_vs_1029_01F-N1-BDNA-1_B23KFG5LT4_1.snv_indel.strelka.indel.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
ls: 1029_01F-T1-TDNA-1_B23VCL7LT4_1_vs_1029_01F-N1-BDNA-1_B23KFG5LT4_1.snv_indel.merged.vcf.gz.csi: No such file or directory