File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/3e738048b5d57bc0c3fd75a14f772b/.command.log
Size
1.2 KB
Task
NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT (1029_0W2-T1-TDNA-1_A23TNLVLT4_1_vs_1029_0W2-N1-BDNA-1_B23KGCJLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/3e738048b5d57bc0c3fd75a14f772b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/3e738048b5d57bc0c3fd75a14f772b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/a5554c534d07f46ea63990c00ea6b9/1029_0W2-T1-TDNA-1_A23TNLVLT4_1_vs_1029_0W2-N1-BDNA-1_B23KGCJLT4_1.snv_indel.tnseq.snv.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/a5554c534d07f46ea63990c00ea6b9/1029_0W2-T1-TDNA-1_A23TNLVLT4_1_vs_1029_0W2-N1-BDNA-1_B23KGCJLT4_1.snv_indel.tnseq.snv.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/aba881c86ab95992e6c8b720e39519/1029_0W2-T1-TDNA-1_A23TNLVLT4_1_vs_1029_0W2-N1-BDNA-1_B23KGCJLT4_1.snv_indel.strelka.indel.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/aba881c86ab95992e6c8b720e39519/1029_0W2-T1-TDNA-1_A23TNLVLT4_1_vs_1029_0W2-N1-BDNA-1_B23KGCJLT4_1.snv_indel.strelka.indel.vcf.gz
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
ls: 1029_0W2-T1-TDNA-1_A23TNLVLT4_1_vs_1029_0W2-N1-BDNA-1_B23KGCJLT4_1.snv_indel.merged.vcf.gz.csi: No such file or directory