File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/67efaa62e5c3140dbdf05a5ed21161/.command.log
Size
1.2 KB
Task
NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT (1029_2LI-T1-TDNA-1_23K7YCLT4_1_vs_1029_2LI-N1-BDNA-1_235YY7LT3_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/c26f44e00138fd79ffa6534ec68cb2/1029_2LI-T1-TDNA-1_23K7YCLT4_1_vs_1029_2LI-N1-BDNA-1_235YY7LT3_1.snv_indel.tnseq.snv.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/67efaa62e5c3140dbdf05a5ed21161/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/67efaa62e5c3140dbdf05a5ed21161/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/c26f44e00138fd79ffa6534ec68cb2/1029_2LI-T1-TDNA-1_23K7YCLT4_1_vs_1029_2LI-N1-BDNA-1_235YY7LT3_1.snv_indel.tnseq.snv.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/ac5536571f35e2bf515a69fda6a4bd/1029_2LI-T1-TDNA-1_23K7YCLT4_1_vs_1029_2LI-N1-BDNA-1_235YY7LT3_1.snv_indel.strelka.indel.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/ac5536571f35e2bf515a69fda6a4bd/1029_2LI-T1-TDNA-1_23K7YCLT4_1_vs_1029_2LI-N1-BDNA-1_235YY7LT3_1.snv_indel.strelka.indel.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
ls: 1029_2LI-T1-TDNA-1_23K7YCLT4_1_vs_1029_2LI-N1-BDNA-1_235YY7LT3_1.snv_indel.merged.vcf.gz.csi: No such file or directory