.command.sh - Workdir - NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:TABIX_VEP (1029_0DT-T1-TDNA-1_B23NN7CLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1;snv_indel)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/d44d788c6c5e8502f1e4af2ea1844e/.command.sh
Size: 332 bytes
Task: NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:TABIX_VEP (1029_0DT-T1-TDNA-1_B23NN7CLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1;snv_indel)
Attempt

Content

#!/bin/bash -Ceuo pipefail
tabix \
    --threads 1 \
     \
    1029_0DT-T1-TDNA-1_B23NN7CLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1.snv_indel.phased.vep.vcf.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:TABIX_VEP":
    tabix: $(echo $(tabix -h 2>&1) | sed 's/^.*Version: //; s/ .*$//')
END_VERSIONS