File Info

Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/c20eb6b412c4642e82731145ddd170/.command.sh
Size
408 bytes
Task
NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:EXTRACT_CHROMOSOMES (1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1)
Attempt

Content

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#!/bin/bash -Ceuo pipefail
tabix -l 1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1.snv_indel.merged.vcf.gz > 1029_0DT-T1-TDNA-1_23K7YCLT4_1_vs_1029_0DT-N1-BDNA-1_235YY7LT3_1.chromosomes.txt

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:EXTRACT_CHROMOSOMES":
    bcftools: $(bcftools --version 2>&1 | head -n1 | sed 's/^.*bcftools //; s/ .*$//')
END_VERSIONS