succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 6s 4s 0s 1s 0 bytes 196% 102.1 KB 2.3 KB 0 bytes 4.0 KB 1
aborted NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (HCC1395_BL) 23s -1s 2s 21s 196.1 MB 1863% 10.4 MB 293.0 KB 0 bytes 25.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (Sig_18_Blood) 15s 1s 3s 10s 474.7 MB 3322% 12.6 MB 326.4 KB 0 bytes 25.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (HCC1395_BL) 34s 4s 2s 27s 397.3 MB 623% 687.0 MB 363.4 KB 0 bytes 8.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (Sig_18_Blood) 34s 5s 3s 25s 488.8 MB 798% 782.5 MB 427.1 KB 0 bytes 8.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 23s 5s 8s 9s 43.2 MB 280% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
aborted NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 6s 3s 2s 1s 133.2 MB 928% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
new NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (HCC1395_BL;tnseq) - - - - - - - - - - 1
new NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (Sig_18_Blood;tnseq) - - - - - - - - - - 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (HCC1395_BL) 28s 22s 4s 2s 192.2 MB 298% 95.9 MB 734.6 KB 0 bytes 740.0 KB 1
aborted NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (Sig_18_Blood) 6s 2s 3s 1s 243.7 MB 318% 95.8 MB 737.2 KB 0 bytes 744.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (HCC1395_BL;chr21_44120631-44120778.bed) 19s 5s 1s 12s 229.4 MB 310% 144.0 MB 99.5 KB 80.0 KB 2.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (HCC1395_BL;chr21_5117103-5117231.bed) 21s 6s 2s 12s 417.1 MB 705% 393.9 MB 173.4 KB 80.0 KB 6.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (Sig_18_Blood;chr21_44120631-44120778.bed) 20s 8s 1s 10s 273.9 MB 450% 176.3 MB 98.3 KB 80.0 KB 2.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (Sig_18_Blood;chr21_5117103-5117231.bed) 32s 15s 5s 11s 595.9 MB 893% 456.6 MB 180.8 KB 80.0 KB 6.2 MB 1
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (HCC1395_BL) - - - - - - - - - - 1
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (Sig_18_Blood) - - - - - - - - - - 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DV_RESCUE (HCC1395_BL;germline_rescue_targets) 1m 19s 52s 17s 9s 3.1 GB 603% 1.2 GB 198.2 MB 0 bytes 203.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DV_RESCUE (Sig_18_Blood;germline_rescue_targets) 1m 18s 52s 17s 8s 3.1 GB 608% 1.2 GB 198.2 MB 0 bytes 203.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BGZIPTABIX_GERMLINE_CNV (HCC1395_BL;null) 4s 3s - - 3.2 MB 155% 110.3 KB 5.3 KB 0 bytes 12.0 KB 1
83 items found |
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