succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta) 3m 58s 1m 13s 2m 32s 13s 387.0 MB 103% 3.0 GB 1.5 GB 0 bytes 1.5 GB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38.bed) 1m 16s 1m 13s - - 5.4 MB 108% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38;null) 1m 15s 1m 13s - - 6.0 MB 106% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr15_81322899-81322948;null) 9s 8s - - 6.0 MB 101% 1.5 MB 392.9 KB 0 bytes 396.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null) 9s 8s - - 6.2 MB 87% 1.6 MB 444.9 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr22_46626800-46626961;null) 9s 8s - - 3.3 MB 153% 352.6 KB 77.4 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_40123127-40123212;null) 9s 8s - - 6.2 MB 106% 1.5 MB 424.9 KB 0 bytes 432.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr9_114905828-114905899;null) 9s 8s - - 6.1 MB 106% 1.6 MB 439.2 KB 0 bytes 444.0 KB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 1m 25s 1m 23s 0s 1s 0 bytes 72% 89.6 KB 14.4 KB 0 bytes 16.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_05O-N1-BDNA-1_2375WFLT3_s02) 5m 42s 1m 14s 2m 58s 1m 29s 1.2 GB 288% 33.6 GB 17.5 GB 0 bytes 571.8 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_05O-N1-BDNA-1_2375WFLT3_s02) 5m 40s 1m 9s 2m 55s 1m 35s 1.3 GB 291% 34.5 GB 18.0 GB 0 bytes 597.0 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_05O-N1-BDNA-1_2375WFLT3_s02) 6m 44s 1m 32s 3m 8s 2m 3s 1.8 GB 357% 49.4 GB 25.6 GB 0 bytes 832.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_2LI-N1-BDNA-1_2375WFLT3_s08) 5m 40s 1m 22s 2m 29s 1m 48s 1.4 GB 369% 41.7 GB 21.6 GB 0 bytes 639.7 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_2LI-N1-BDNA-1_2375WFLT3_s08) 4m 39s 1m 16s 2m 8s 1m 14s 872.8 MB 298% 26.8 GB 13.8 GB 0 bytes 141.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_2LI-N1-BDNA-1_2375WFLT3_s08) 4m 39s 1m 13s 2m 11s 1m 14s 897.1 MB 301% 28.1 GB 14.4 GB 0 bytes 133.0 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_3OH-N1-BDNA-1_2375WFLT3_s10) 4m 48s 1m 7s 2m 29s 1m 11s 1.0 GB 289% 29.1 GB 15.1 GB 0 bytes 479.6 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_3OH-N1-BDNA-1_2375WFLT3_s10) 6m 29s 1m 18s 3m 16s 1m 54s 1.6 GB 303% 43.4 GB 22.5 GB 0 bytes 700.0 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_3OH-N1-BDNA-1_2375WFLT3_s10) 4m 28s 1m 22s 1m 56s 1m 9s 1.0 GB 343% 29.4 GB 15.3 GB 0 bytes 458.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_56D-N1-BDNA-1_2375WFLT3_s13) 4m 45s 1m 18s 2m 19s 1m 7s 1002.8 MB 296% 27.2 GB 14.2 GB 0 bytes 464.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_56D-N1-BDNA-1_2375WFLT3_s13) 5m 26s 1m 21s 2m 23s 1m 41s 1.5 GB 375% 39.2 GB 20.3 GB 0 bytes 665.6 MB 1
153 items found |
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