|
succeeded
|
NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet)
|
2s |
1s |
0s |
0s |
0 bytes |
84% |
127.8 KB |
2.4 KB |
0 bytes |
4.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation)
|
2s |
1s |
0s |
0s |
18.9 MB |
99% |
2.0 MB |
1011 bytes |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (HCC1395_BL)
|
6s |
2s |
0s |
3s |
21.6 MB |
216% |
131.5 MB |
12.3 MB |
0 bytes |
3.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (HCC1395_tumor)
|
5s |
1s |
1s |
2s |
102.7 MB |
203% |
287.8 MB |
13.1 MB |
0 bytes |
3.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (Sig_18_Blood)
|
5s |
1s |
0s |
3s |
21.2 MB |
215% |
157.6 MB |
12.6 MB |
0 bytes |
3.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (Sig_18_tissue)
|
8s |
1s |
3s |
3s |
182.4 MB |
198% |
558.7 MB |
13.2 MB |
0 bytes |
3.6 MB |
1 |
|
aborted
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL (custom_Sig_18_tumor_normal)
|
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
4 |
|
aborted
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL (HCC1395_tumor_vs_HCC1395_BL)
|
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (HCC1395_BL)
|
5s |
1s |
1s |
2s |
209.1 MB |
2065% |
61.0 MB |
197.6 KB |
0 bytes |
208.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (HCC1395_tumor)
|
5s |
2s |
1s |
1s |
202.2 MB |
1993% |
61.0 MB |
204.6 KB |
0 bytes |
212.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (Sig_18_Blood)
|
5s |
2s |
1s |
1s |
155.3 MB |
1684% |
61.0 MB |
197.6 KB |
0 bytes |
208.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (Sig_18_tissue)
|
6s |
2s |
1s |
2s |
150.3 MB |
1698% |
61.0 MB |
207.4 KB |
0 bytes |
216.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS (HCC1395_BL)
|
6s |
2s |
0s |
3s |
10.2 MB |
104% |
109.8 MB |
2.1 MB |
0 bytes |
640.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS (HCC1395_tumor)
|
8s |
2s |
1s |
4s |
26.6 MB |
102% |
265.3 MB |
2.2 MB |
0 bytes |
656.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS (Sig_18_Blood)
|
6s |
1s |
0s |
4s |
10.1 MB |
103% |
135.5 MB |
2.2 MB |
0 bytes |
648.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS (Sig_18_tissue)
|
9s |
1s |
3s |
4s |
53.1 MB |
101% |
536.2 MB |
2.2 MB |
0 bytes |
652.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL)
|
12s |
1s |
1s |
10s |
38.3 MB |
185% |
107.0 MB |
3.4 MB |
0 bytes |
3.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_tumor)
|
12s |
1s |
2s |
9s |
212.7 MB |
229% |
262.4 MB |
4.9 MB |
0 bytes |
4.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_Blood)
|
12s |
2s |
1s |
9s |
383.7 MB |
193% |
132.7 MB |
4.0 MB |
0 bytes |
4.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue)
|
14s |
1s |
4s |
9s |
255.3 MB |
218% |
533.3 MB |
6.3 MB |
4.0 KB |
6.3 MB |
1 |