NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL (HCC1395_tumor_vs_HCC1395_BL) - sarek-regression-somacnv-v2 - Workflow Tracker

Runs
sarek-regres..-somacnv-v2
Tasks
SOMA_CNV_CALL (HCC1395_tumor_vs_HCC1395_BL)

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Task Info

Status: aborted
Hash: d7865cf85179
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL
Tag: HCC1395_tumor_vs_HCC1395_BL
Attempts: 4

Attempt 4

Execution

Status: aborted
Hash: b4/628ef8
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260604-348e5b5
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/628ef85c01b93c71bacf564bf39df4
Native ID: nf-b4628ef85c01b93c71bacf564bf39df4-0ee88

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 128.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Jun 04, 2026 9:43:55 AM
Completed: Jun 04, 2026 9:44:37 AM
Total Duration: -

Phases

Queue: 113h 49m
Execution: -
Stage/Unstage: -

Attempt 3

Execution

Status: failed
Hash: 9f/93f64b
Failure Reason: Error
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260604-348e5b5
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/93f64b29636e5daa6ad794eb63f79a
Native ID: nf-9f93f64b29636e5daa6ad794eb63f79a-33bca

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 96.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-00c073d3b74a70ade ( on-demand)

Runtime

Submitted: Jun 04, 2026 9:42:55 AM
Completed: Jun 04, 2026 9:43:21 AM
Total Duration: 25s

Phases

Queue: 3s
Execution: 22s
Stage/Unstage: 0s

Attempt 2

Execution

Status: failed
Hash: 3b/8a07ac
Failure Reason: Error
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260604-348e5b5
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/8a07acb5404ee80b5473fb5933672c
Native ID: nf-3b8a07acb5404ee80b5473fb5933672c-f39a3

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-00c073d3b74a70ade ( on-demand)

Runtime

Submitted: Jun 04, 2026 9:40:55 AM
Completed: Jun 04, 2026 9:41:58 AM
Total Duration: 1m 2s

Phases

Queue: 40s
Execution: 22s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: 5c/1e77f7
Failure Reason: Error
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260604-348e5b5
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/1e77f72e022ecdf49978cfe3d767a3
Native ID: nf-5c1e77f72e022ecdf49978cfe3d767a3-08160

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 32.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0dca556e639cc00c5 ( spot)

Runtime

Submitted: Jun 04, 2026 9:39:56 AM
Completed: Jun 04, 2026 9:40:49 AM
Total Duration: 52s

Phases

Queue: 38s
Execution: 14s
Stage/Unstage: 0s