NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL (custom_Sig_18_tumor_normal) - sarek-regression-somacnv-v2 - Workflow Tracker

Runs
sarek-regres..-somacnv-v2
Tasks
SOMA_CNV_CALL (custom_Sig_18_tumor_normal)

Login

Task Info

Status: aborted
Hash: f91411fa3bb2
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL
Tag: custom_Sig_18_tumor_normal
Attempts: 4

Attempt 4

Execution

Status: aborted
Hash: 4c/738d82
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260604-348e5b5
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/738d824ff28ce6a01681e084960c89
Native ID: nf-4c738d824ff28ce6a01681e084960c89-0df27

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 128.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Jun 04, 2026 9:43:56 AM
Completed: Jun 04, 2026 9:44:39 AM
Total Duration: -

Phases

Queue: 113h 44m
Execution: -
Stage/Unstage: -

Attempt 3

Execution

Status: failed
Hash: 2b/949f0f
Failure Reason: Error
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260604-348e5b5
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/949f0ff7e6f2676152c9aacbe04e62
Native ID: nf-2b949f0ff7e6f2676152c9aacbe04e62-0637b

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 96.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-039b7e56c89c2acdc ( on-demand)

Runtime

Submitted: Jun 04, 2026 9:42:56 AM
Completed: Jun 04, 2026 9:43:39 AM
Total Duration: 42s

Phases

Queue: 11s
Execution: 31s
Stage/Unstage: 0s

Attempt 2

Execution

Status: failed
Hash: 9d/bfe3a3
Failure Reason: Error
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260604-348e5b5
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/bfe3a3416a90b7fb0ba4a1248ceaa3
Native ID: nf-9dbfe3a3416a90b7fb0ba4a1248ceaa3-e2fef

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-00c073d3b74a70ade ( on-demand)

Runtime

Submitted: Jun 04, 2026 9:41:55 AM
Completed: Jun 04, 2026 9:42:34 AM
Total Duration: 38s

Phases

Queue: 7s
Execution: 31s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: 93/f24684
Failure Reason: Error
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260604-348e5b5
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/f24684d51722c7f410f98d88a107d4
Native ID: nf-93f24684d51722c7f410f98d88a107d4-bea02

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 32.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0dca556e639cc00c5 ( spot)

Runtime

Submitted: Jun 04, 2026 9:39:56 AM
Completed: Jun 04, 2026 9:40:55 AM
Total Duration: 58s

Phases

Queue: 38s
Execution: 20s
Stage/Unstage: 0s