File Info

Filename
HCC1395_tumor_gam_stats.json
Full Path
s3://ai-pipelines-experiment/chnobles/nf_sarek_regression_somacnv_v3/results/variant_calling/somatic_cnv/normalized/HCC1395_tumor_vs_HCC1395_BL/HCC1395_tumor_gam_stats.json
Size
633 bytes
Workflow Run
sarek-regression-somacnv-v3
Published
Jun 04, 2026 9:48 AM

Content

View in new tab 
{
  "sample_id": "HCC1395_tumor",
  "specimen_id": "HCC1395_tumor_vs_HCC1395_BL",
  "flowcell": "unknown",
  "sample_type": "tumor",
  "r2": 0.880883307910466,
  "partial_range_gc_probe": 2.0826735204274227,
  "partial_range_median_insert_size": 3.810470555262569,
  "partial_range_qcd": 4.108273591864955,
  "partial_range_probe_coverage_median": 3.289662969259255,
  "partial_range_dup_rate": 2.6051936052806504,
  "partial_var_gc_probe": 0.30984733514363966,
  "partial_var_median_insert_size": 0.186632943808926,
  "partial_var_qcd": 0.01690674308018026,
  "partial_var_probe_coverage_median": 0.23864082356637092,
  "partial_var_dup_rate": 0.2479721544008832
}