[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
Loaded 735874 sites across 3366 contigs
Loaded 735874 sites across 3366 contigs
Reads: 0 total, 0 skipped (flags/unmapped), 0 no site overlap
Fragments: 0 total (0 paired, 0 singletons, 0 discordant, 0 orphans)
Sites: 735874 total, 0 with data, 0 output (depth>=10)
Reads: 9109949 total, 1516 skipped (flags/unmapped), 530821 no site overlap
Fragments: 4732496 total (3845116 paired, 44 singletons, 0 discordant, 887336 orphans)
Sites: 735874 total, 37939 with data, 37491 output (depth>=10)