.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (Sig_18_tissue)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/946ffa246d8031198c2718f3b8bf77/.command.log
Size: 873 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (Sig_18_tissue)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/946ffa246d8031198c2718f3b8bf77/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/shared/somatic_cnv/regression_ref_build/somatic_cnv/norm_reference/sex_calls.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/946ffa246d8031198c2718f3b8bf77/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/cf6e42e50e8b156844485c1c709ed1/Sig_18_tissue_probes.tsv.gz
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/shared/somatic_cnv/regression_ref_build/somatic_cnv/norm_reference/batch_reference.parquet
==> STAGING COMPLETE (5 inputs)

Loaded 4,819 probes for Sig_18_tissue
  5-feature GAM: R²=0.9151
  Wrote Sig_18_tissue_normalized.parquet
  Wrote feature stats to Sig_18_tissue_gam_stats.json
  Done in 0.5s