Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recal.bam.bai
Deduplicated 15 probes with identical coordinates
Loaded 4819 probes across 3366 contigs
Reads: 0 total, 0 skipped (flags/unmapped)
Fragments: 0 total (0 tlen-paired, 0 hash-paired, 0 singletons, 0 discordant, 0 orphans, 0 too large [>5000 bp], 0 duplicates)
Deduplicated 15 probes with identical coordinates
Loaded 4819 probes across 3366 contigs
Reads: 0 total, 0 skipped (flags/unmapped)
Fragments: 0 total (0 tlen-paired, 0 hash-paired, 0 singletons, 0 discordant, 0 orphans, 0 too large [>5000 bp], 0 duplicates)
Deduplicated 15 probes with identical coordinates
Loaded 4819 probes across 3366 contigs
Deduplicated 15 probes with identical coordinates
Loaded 4819 probes across 3366 contigs
Reads: 0 total, 0 skipped (flags/unmapped)
Fragments: 0 total (0 tlen-paired, 0 hash-paired, 0 singletons, 0 discordant, 0 orphans, 0 too large [>5000 bp], 0 duplicates)
Reads: 3618686 total, 765 skipped (flags/unmapped)
Fragments: 1817976 total (1817315 tlen-paired, 110 hash-paired, 19 singletons, 0 discordant, 532 orphans, 225 too large [>5000 bp], 765992 duplicates)