.command.err - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (Sig_18_Blood)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/1368d74ac1de3322fc64cc56b8fbb6/.command.err
Size: 489 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (Sig_18_Blood)
Attempt

Content

Loaded 735874 sites across 3366 contigs
Loaded 735874 sites across 3366 contigs
Reads: 0 total, 0 skipped (flags/unmapped), 0 no site overlap
Fragments: 0 total (0 paired, 0 singletons, 0 discordant, 0 orphans)
Sites: 735874 total, 0 with data, 0 output (depth>=10)
Reads: 1685487 total, 159 skipped (flags/unmapped), 100896 no site overlap
Fragments: 922574 total (661858 paired, 13 singletons, 0 discordant, 260703 orphans)
Sites: 735874 total, 37775 with data, 36345 output (depth>=10)