File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/b5ff133476fcc00b257d4ecbe326a9/.command.log
Size
1.4 KB
Task
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/b5ff133476fcc00b257d4ecbe326a9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/b5ff133476fcc00b257d4ecbe326a9/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/output_runs/dev_latest_regression_eks__47a821d--20260221-174447/preprocessing/recalibrated/Sig_18_tissue/Sig_18_tissue.recal.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_intervals/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/output_runs/dev_latest_regression_eks__47a821d--20260221-174447/preprocessing/recalibrated/Sig_18_tissue/Sig_18_tissue.recal.bam.bai
==> STAGING COMPLETE (6 inputs)

[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
ls: *.per-base.d4: No such file or directory
ls: *.quantized.bed.gz: No such file or directory
ls: *.quantized.bed.gz.csi: No such file or directory
ls: *.thresholds.bed.gz: No such file or directory
ls: *.thresholds.bed.gz.csi: No such file or directory