|
succeeded
|
NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet)
|
6s |
5s |
0s |
0s |
0 bytes |
178% |
71.2 KB |
2.4 KB |
0 bytes |
4.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation)
|
3s |
1s |
0s |
1s |
14.0 MB |
105% |
2.0 MB |
1000 bytes |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (HCC1395_BL)
|
6s |
2s |
0s |
3s |
22.1 MB |
212% |
131.5 MB |
12.3 MB |
0 bytes |
3.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (HCC1395_tumor)
|
7s |
2s |
1s |
3s |
103.5 MB |
205% |
287.8 MB |
13.1 MB |
0 bytes |
3.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (Sig_18_Blood)
|
13s |
10s |
0s |
2s |
21.1 MB |
211% |
157.6 MB |
12.6 MB |
0 bytes |
3.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (Sig_18_tissue)
|
12s |
5s |
4s |
2s |
196.2 MB |
180% |
558.7 MB |
13.2 MB |
0 bytes |
3.6 MB |
1 |
|
failed
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL (custom_Sig_18_tumor_normal)
|
23s |
1s |
22s |
0s |
- |
- |
- |
- |
- |
- |
4 |
|
failed
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL (HCC1395_tumor_vs_HCC1395_BL)
|
18s |
2s |
16s |
0s |
- |
- |
- |
- |
- |
- |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (HCC1395_BL)
|
8s |
1s |
5s |
1s |
251.7 MB |
767% |
60.2 MB |
197.6 KB |
0 bytes |
208.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (HCC1395_tumor)
|
12s |
9s |
1s |
1s |
165.1 MB |
1897% |
61.2 MB |
204.6 KB |
0 bytes |
212.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (Sig_18_Blood)
|
5s |
1s |
1s |
2s |
196.8 MB |
1837% |
61.2 MB |
197.6 KB |
0 bytes |
208.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (Sig_18_tissue)
|
17s |
14s |
1s |
1s |
156.6 MB |
1762% |
61.2 MB |
207.4 KB |
0 bytes |
216.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS (HCC1395_BL)
|
4s |
1s |
0s |
2s |
10.0 MB |
102% |
109.8 MB |
2.1 MB |
44.0 KB |
640.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS (HCC1395_tumor)
|
12s |
8s |
1s |
2s |
25.8 MB |
102% |
265.3 MB |
2.2 MB |
0 bytes |
656.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS (Sig_18_Blood)
|
12s |
8s |
0s |
3s |
10.1 MB |
105% |
135.5 MB |
2.2 MB |
0 bytes |
648.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS (Sig_18_tissue)
|
17s |
8s |
6s |
2s |
52.9 MB |
101% |
536.1 MB |
2.2 MB |
0 bytes |
652.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL)
|
13s |
2s |
1s |
10s |
376.7 MB |
185% |
107.0 MB |
3.4 MB |
0 bytes |
3.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_tumor)
|
13s |
2s |
2s |
9s |
211.9 MB |
228% |
262.4 MB |
4.9 MB |
0 bytes |
4.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_Blood)
|
14s |
3s |
1s |
10s |
384.4 MB |
192% |
132.7 MB |
4.0 MB |
0 bytes |
4.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue)
|
15s |
1s |
5s |
9s |
452.8 MB |
218% |
533.3 MB |
6.3 MB |
4.0 KB |
6.3 MB |
1 |