Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/9ec20b4e4c00562f939be9aae089e1/HCC1395_tumor.mosdepth.global.dist.txt
  Downloading: s3://ai-pipelines-experiment/chnobles/nf_sarek_regression_somacnv_v5/results/pipeline_info/nf_core_sarek_software_mqc_versions.yml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/8f0b4eeb18847070c3660641ccc1a8/HCC1395_BL.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/673d576e5445765549c80dbc1ba0ae/variant_qc.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/4c2f233b0cc353a8fadc450c6f67c7/Sig_18_Blood.mosdepth.global.dist.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/4a2af89adc56ee8f060756a4a6ad0a/HCC1395_tumor.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/4c2f233b0cc353a8fadc450c6f67c7/Sig_18_Blood.mosdepth.region.dist.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/c5aa38fcccf7103374bf424831f240/Sig_18_tissue.mosdepth.global.dist.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/8897d7696e000d56318a3bfae89602/Sig_18_tissue.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/1c36dc497d610b7c274876a566f5bf/HCC1395_BL.mosdepth.global.dist.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/bb49824af1d7e5db47912aedb918a8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-b2f7a3db-2222-4e60-ae0b-c4b2166df53c/37/535c6e2daa7d4a35827e2bafa61141/multiqc_config.yml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/c5aa38fcccf7103374bf424831f240/Sig_18_tissue.mosdepth.region.dist.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/c9/9698f5f5658e35b391c46434c1e1b1/workflow_summary_mqc.yaml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/ee35b97c05436d6bc9f770b3ca72d7/Sig_18_Blood.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/9ec20b4e4c00562f939be9aae089e1/HCC1395_tumor.mosdepth.region.dist.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/1b/14d6c327ff8f770c0acf6dfd65b35a/methods_description_mqc.yaml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/bb49824af1d7e5db47912aedb918a8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/02aadd4096e67ade222abe374b8686/variant_qc.json
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/1c36dc497d610b7c274876a566f5bf/HCC1395_BL.mosdepth.region.dist.txt
==> STAGING COMPLETE (20 inputs)


/// MultiQC 🔍 v1.33

            config | Loading config settings from: multiqc_config.yml
            config | Config 'custom_logo' path not found, skipping (nf-core-sarek_logo_light.png)
     version_check | MultiQC Version v1.35 now available!
       file_search | Search path: /tmp/nxf.6RJhfc3liy
       file_search | Only using modules: custom_content, fastqc, fastp, picard, samtools, mosdepth, gatk, bcftools, vcftools, snpeff, vep
    custom_content | nf-core-sarek-methods-description: Found 1 sample (html)
    custom_content | altera-sarek-summary: Found 1 sample (html)
          samtools | Found 4 stats reports
          mosdepth | Found reports for 4 samples
        validation | mosdepth/mosdepth.py: warnings while parsing barplot.pconfig[id='mosdepth-coverage-per-contig-single'] {id: mosdepth-coverage-per-contig-single, title: Mosdepth: Coverage per contig, xlab: Sample, ylab: Average Coverage, tt_suffix: x, hide_zero_cats: False, categories: True}:
• 'categories': unrecognized field. Available fields: id, title, subtitle, anchor, height, width, square, logswitch, logswitch_active, logswitch_label, cpswitch, cpswitch_c_active, cpswitch_counts_label, cpswitch_percent_label, xlog, ylog, data_labels, xlab, ylab, xsuffix, ysuffix, tt_suffix, xlab_format, ylab_format, tt_label, x_decimals, y_decimals, tt_decimals, xmin, xmax, ymin, ymax, x_clipmin, x_clipmax, y_clipmin, y_clipmax, save_data_file, showlegend, x_minrange, y_minrange, x_bands, y_bands, x_lines, y_lines, series_label, flat_if_very_large, stacking, hide_zero_cats, sort_samples, cluster_samples, cluster_method, cluster_switch_clustered_active, use_legend, suffix, lab_format, sample_groups
       file_search | Only using modules: samtools, mosdepth, nf-core-sarek-methods-description, altera-sarek-summary
     write_results | Rendering plots. Export plots to formats png, svg, pdf is requested, so it might take a while. To disable plot export, set `export_plots: false` in config, or remove the `--export-plots` command line flag
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '77,175,74' to RGB: input #77,175,74 is not in #RRGGBB format
        mqc_colour | Error converting color '77,175,74' to RGB: input #77,175,74 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '77,175,74' to RGB: input #77,175,74 is not in #RRGGBB format
        mqc_colour | Error converting color '77,175,74' to RGB: input #77,175,74 is not in #RRGGBB format
        mqc_colour | Error converting color '77,175,74' to RGB: input #77,175,74 is not in #RRGGBB format
        mqc_colour | Error converting color '77,175,74' to RGB: input #77,175,74 is not in #RRGGBB format
     write_results | Data        : multiqc_data
     write_results | Report      : multiqc_report.html
     write_results | Plots       : multiqc_plots
           multiqc | MultiQC complete