File Info
- Filename
- HCC1395_tumor_vs_HCC1395_BL_segments.tsv
- Full Path
- s3://ai-pipelines-experiment/chnobles/nf_sarek_regression_somacnv_v6/results/variant_calling/somatic_cnv/HCC1395_tumor_vs_HCC1395_BL/segments/HCC1395_tumor_vs_HCC1395_BL_segments.tsv
- Size
- 1.5 KB
- Workflow Run
- sarek-regression-somacnv-v6
- Published
- Jun 04, 2026 11:33 AM
Content
View in new tab| seg_id | specimen_id | chrom | start | end | tumor_sample_id | normal_sample_id | n_probes | n_het_sites | cnlr_median | cnlr_wmean | mean_mbaf | median_het_depth | mean_valor | mafR | tcn | lcn | call | clone_subset | clone_purity | purity | clonal_frac | n_clones | dipLogR | z_score | residual_lr | residual_lor | sample_type |
| 1 | HCC1395_tumor_vs_HCC1395_BL | chr21 | 5117108 | 36937198 | HCC1395_tumor.recal.bam | HCC1395_BL.recal.bam | 2054 | 200 | -0.0035 | -0.039 | 0.5494 | 255.0 | 0.2208 | 0.0586 | 2 | 0 | cn-loh | 1 | 0.0749 | 0.0749 | 1.0 | 1 | 0.03 | 8.84 | -0.0035 | -0.0018 | somatic |
| 2 | HCC1395_tumor_vs_HCC1395_BL | chr21 | 36937266 | 38822900 | HCC1395_tumor.recal.bam | HCC1395_BL.recal.bam | 299 | 10 | -0.8985 | -0.9136 | 0.9971 | 96.0 | 5.0086 | 25.6393 | 0 | 0 | del | 1 | 0.0749 | 0.0749 | 1.0 | 1 | 0.03 | 99.84 | -0.7862 | 5.7587 | somatic |
| 3 | HCC1395_tumor_vs_HCC1395_BL | chr21 | 39175539 | 44425747 | HCC1395_tumor.recal.bam | HCC1395_BL.recal.bam | 1483 | 229 | -0.0709 | -0.1161 | 0.5327 | 340.0 | 0.1481 | 0.0221 | 1 | 0 | del | 1 | 0.0749 | 0.0749 | 1.0 | 1 | 0.03 | 12.56 | -0.0158 | 0.0099 | somatic |
| 4 | HCC1395_tumor_vs_HCC1395_BL | chr21 | 44425755 | 44435277 | HCC1395_tumor.recal.bam | HCC1395_BL.recal.bam | 8 | 0 | -0.5141 | -0.5304 | 0 | 0 | del | 1 | 0.0749 | 0.0749 | 1.0 | 1 | 0.03 | 5.99 | -0.4018 | 0.0 | somatic | ||||
| 5 | HCC1395_tumor_vs_HCC1395_BL | chr21 | 44437009 | 45537982 | HCC1395_tumor.recal.bam | HCC1395_BL.recal.bam | 288 | 46 | -0.1518 | -0.1779 | 0.5539 | 298.0 | 0.2058 | 0.0481 | 0 | 0 | del | 1 | 0.0749 | 0.0749 | 1.0 | 1 | 0.03 | 11.68 | -0.0395 | 0.1702 | somatic |
| 6 | HCC1395_tumor_vs_HCC1395_BL | chr21 | 45850003 | 46664423 | HCC1395_tumor.recal.bam | HCC1395_BL.recal.bam | 448 | 99 | 0.4928 | 0.478 | 0.6614 | 375.0 | 0.6435 | 0.4278 | 13 | 1 | high-amp | 1 | 0.0749 | 0.0749 | 1.0 | 1 | 0.03 | 50.4 | -0.0049 | 0.0273 | somatic |
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