File Info

Filename
custom_Sig_18_tumor_normal_segments.tsv
Full Path
s3://ai-pipelines-experiment/chnobles/nf_sarek_regression_somacnv_v6/results/variant_calling/somatic_cnv/custom_Sig_18_tumor_normal/segments/custom_Sig_18_tumor_normal_segments.tsv
Size
3.0 KB
Workflow Run
sarek-regression-somacnv-v6
Published
Jun 04, 2026 11:33 AM

Content

View in new tab
seg_id specimen_id chrom start end tumor_sample_id normal_sample_id n_probes n_het_sites cnlr_median cnlr_wmean mean_mbaf median_het_depth mean_valor mafR tcn lcn call clone_subset clone_purity purity clonal_frac n_clones dipLogR z_score residual_lr residual_lor sample_type
1 custom_Sig_18_tumor_normal chr21 5117108 30282287 Sig_18_tissue.recal.bam Sig_18_Blood.recal.bam 863 74 0.147 0.1389 0.5572 527.0 0.1483 0.0087 3 1 amp 1;2;3 0.2149 0.2149 1.0 3 -0.108 16.98 -0.0003 0.0004 somatic
2 custom_Sig_18_tumor_normal chr21 30282314 31225853 Sig_18_tissue.recal.bam Sig_18_Blood.recal.bam 134 12 0.4082 0.5642 0.524 1235.5 0.2402 0.0984 5 2 amp 2;3 0.1517 0.2149 0.7059 3 -0.108 13.75 0.1124 -0.0504 somatic
3 custom_Sig_18_tumor_normal chr21 31225830 32656902 Sig_18_tissue.recal.bam Sig_18_Blood.recal.bam 249 27 0.2276 0.2411 0.5329 685.0 0.257 0.0591 5 2 amp 1;2 0.1215 0.2149 0.5654 3 -0.108 10.98 -0.014 -0.0016 somatic
4 custom_Sig_18_tumor_normal chr21 32656972 37625526 Sig_18_tissue.recal.bam Sig_18_Blood.recal.bam 982 69 0.1321 0.0889 0.5233 495.0 0.1651 0.0186 5 2 amp 1 0.0632 0.2149 0.2941 3 -0.108 12.39 0.0014 -0.0004 somatic
5 custom_Sig_18_tumor_normal chr21 37714219 41464867 Sig_18_tissue.recal.bam Sig_18_Blood.recal.bam 498 80 0.1834 0.2563 0.5289 478.0 0.1364 0.0111 5 2 amp 3 0.0934 0.2149 0.4346 3 -0.108 12.78 -0.0058 -0.0027 somatic
6 custom_Sig_18_tumor_normal chr21 41464867 44114288 Sig_18_tissue.recal.bam Sig_18_Blood.recal.bam 851 171 0.0492 0.0773 0.5216 841.0 0.0784 0.0031 3 1 amp 1 0.0632 0.2149 0.2941 3 -0.108 6.73 0.0043 -0.0024 somatic
7 custom_Sig_18_tumor_normal chr21 44114568 44118858 Sig_18_tissue.recal.bam Sig_18_Blood.recal.bam 12 0 -0.3298 -0.5686 0 0 del 1;2;3 0.2149 0.2149 1.0 3 -0.108 3.3 0.0193 0.0 somatic
8 custom_Sig_18_tumor_normal chr21 44119394 44425875 Sig_18_tissue.recal.bam Sig_18_Blood.recal.bam 249 17 -0.0561 -0.0724 0.5411 491.0 0.0789 0.0077 1 0 del 1;2 0.1215 0.2149 0.5654 3 -0.108 4.46 0.0343 -0.0008 somatic
9 custom_Sig_18_tumor_normal chr21 44426606 44504940 Sig_18_tissue.recal.bam Sig_18_Blood.recal.bam 23 2 -0.1108 -0.4037 0.5189 212.0 0.3688 0.0605 1 0 del 2;3 0.1517 0.2149 0.7059 3 -0.108 1.53 0.003 0.0 somatic
10 custom_Sig_18_tumor_normal chr21 44509176 44873666 Sig_18_tissue.recal.bam Sig_18_Blood.recal.bam 110 28 0.1546 0.23 0.5433 664.0 0.1652 0.036 3 1 amp 1;3 0.1566 0.2149 0.7287 3 -0.108 6.99 0.0458 -0.0028 somatic
11 custom_Sig_18_tumor_normal chr21 44886339 45489562 Sig_18_tissue.recal.bam Sig_18_Blood.recal.bam 113 9 0.0158 -0.028 0.5259 737.0 0.1591 0.016 3 1 amp 1 0.0632 0.2149 0.2941 3 -0.108 1.61 -0.0291 0.013 somatic
12 custom_Sig_18_tumor_normal chr21 45490260 46191287 Sig_18_tissue.recal.bam Sig_18_Blood.recal.bam 196 58 -0.1331 -0.1722 0.5341 424.5 0.1518 0.0094 1 0 del 3 0.0934 0.2149 0.4346 3 -0.108 7.43 -0.0641 -0.0002 somatic
13 custom_Sig_18_tumor_normal chr21 46191859 46664423 Sig_18_tissue.recal.bam Sig_18_Blood.recal.bam 301 35 0.1338 0.1328 0.5365 601.0 0.1914 0.018 6 2 amp 2 0.0583 0.2149 0.2713 3 -0.108 8.14 -0.0253 0.0092 somatic
14 rows