Processes


NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET	1
CRAM_QC_RECAL:SAMTOOLS_STATS	4
CRAM_QC_RECAL:MOSDEPTH	4
BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP
BAM_NGSCHECKMATE:NGSCHECKMATE_NCM
BAM_VARIANT_CALLING_SOMATIC_ALL:SAMTOOLS_CONVERT_CRAM_TO_BAM
SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS	4
SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS	4
SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE	4
SOMATIC_CNV_CALLING:SOMA_CNV_CALL	2
SOMATIC_CNV_CALLING:SOMA_CNV_EXPORT_VIEWER	2
VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS
VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_TSTV_COUNT
VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_TSTV_QUAL
VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_SUMMARY
SAREK:AGGREGATE_VARIANT_QC	1
SAREK:VARIANT_QC_TO_CSV	1
SAREK:MULTIQC	1
SAREK:WRITE_TRACKER_YML	1