.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (HCC1395_tumor)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/a3cb7fc749aa45773cce1206035ee0/.command.log
Size: 873 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (HCC1395_tumor)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/0db80ef307f74e7e664d27eec195dc/HCC1395_tumor_probes.tsv.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/a3cb7fc749aa45773cce1206035ee0/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/shared/somatic_cnv/regression_ref_build/somatic_cnv/norm_reference/sex_calls.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/a3cb7fc749aa45773cce1206035ee0/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/shared/somatic_cnv/regression_ref_build/somatic_cnv/norm_reference/batch_reference.parquet
==> STAGING COMPLETE (5 inputs)

Loaded 4,819 probes for HCC1395_tumor
  5-feature GAM: R²=0.8809
  Wrote HCC1395_tumor_normalized.parquet
  Wrote feature stats to HCC1395_tumor_gam_stats.json
  Done in 1.1s