succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 1m 12s 1m 10s 0s 1s 0 bytes 200% 100.2 KB 2.4 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 1m 32s 1m 30s 0s 1s 15.2 MB 102% 2.0 MB 1001 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (HCC1395_BL) 1m 24s 1m 19s 1s 3s 55.6 MB 186% 131.5 MB 12.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (HCC1395_tumor) 1m 27s 1m 20s 3s 3s 121.5 MB 186% 287.7 MB 13.1 MB 0 bytes 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (Sig_18_Blood) 1m 23s 1m 19s 1s 2s 70.2 MB 195% 157.5 MB 12.6 MB 0 bytes 3.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (Sig_18_tissue) 1m 29s 1m 19s 6s 3s 194.3 MB 173% 558.7 MB 13.2 MB 0 bytes 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL (custom_Sig_18_tumor_normal) 32s 2s 27s 2s 7.0 GB 413% 160.5 MB 1.8 MB 0 bytes 1.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL (HCC1395_tumor_vs_HCC1395_BL) 25s 2s 19s 3s 6.7 GB 479% 155.1 MB 1.7 MB 0 bytes 1.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_EXPORT_VIEWER (custom_Sig_18_tumor_normal) 6s 2s 2s 1s 232.2 MB 716% 44.1 MB 86.6 KB 0 bytes 100.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_EXPORT_VIEWER (HCC1395_tumor_vs_HCC1395_BL) 6s 2s 2s 1s 232.1 MB 716% 44.1 MB 84.0 KB 0 bytes 96.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (HCC1395_BL) 7s 3s 2s 1s 245.6 MB 1395% 60.5 MB 197.6 KB 0 bytes 208.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (HCC1395_tumor) 8s 3s 2s 2s 222.6 MB 1417% 60.5 MB 204.6 KB 0 bytes 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (Sig_18_Blood) 7s 2s 2s 2s 242.2 MB 1227% 60.5 MB 197.6 KB 0 bytes 208.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (Sig_18_tissue) 7s 2s 3s 1s 218.2 MB 1288% 60.5 MB 207.4 KB 0 bytes 216.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS (HCC1395_BL) 1m 23s 1m 18s 1s 3s 9.8 MB 104% 109.8 MB 2.1 MB 0 bytes 640.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS (HCC1395_tumor) 1m 22s 1m 17s 2s 2s 28.8 MB 103% 265.3 MB 2.2 MB 0 bytes 656.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS (Sig_18_Blood) 1m 22s 1m 18s 1s 2s 19.0 MB 105% 135.5 MB 2.2 MB 0 bytes 648.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS (Sig_18_tissue) 1m 26s 1m 17s 6s 2s 52.5 MB 102% 536.2 MB 2.2 MB 0 bytes 652.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 1m 21s 1m 8s 2s 11s 380.0 MB 217% 107.0 MB 3.4 MB 0 bytes 3.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_tumor) 1m 27s 1m 10s 2s 15s 398.2 MB 257% 262.4 MB 4.9 MB 0 bytes 4.9 MB 1
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