NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL (custom_Sig_18_tumor_normal) - sarek-regression-somacnv - Workflow Tracker

Runs
sarek-regression-somacnv
Tasks
SOMA_CNV_CALL (custom_Sig_18_tumor_normal)

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Task Info

Status: aborted
Hash: 0d4b2b042596
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL
Tag: custom_Sig_18_tumor_normal
Attempts: 4

Attempt 4

Execution

Status: aborted
Hash: e4/9f4359
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260603-050173b
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/9f435926c1e6f91b00c5bcdcc18999
Native ID: nf-e49f435926c1e6f91b00c5bcdcc18999-129c9

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 128.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -

Runtime

Submitted: Jun 04, 2026 9:25:13 AM
Completed: Jun 04, 2026 9:25:13 AM
Total Duration: -

Phases

Queue: 113h 6m
Execution: -
Stage/Unstage: -

Attempt 3

Execution

Status: failed
Hash: fc/bb8598
Failure Reason: Error
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260603-050173b
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/bb85980035e90f1ee090ed7ebfa389
Native ID: nf-fcbb85980035e90f1ee090ed7ebfa389-08bec

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 96.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0a5c6d75bafa9382c ( on-demand)

Runtime

Submitted: Jun 04, 2026 9:23:13 AM
Completed: Jun 04, 2026 9:24:24 AM
Total Duration: 1m 10s

Phases

Queue: 40s
Execution: 30s
Stage/Unstage: 0s

Attempt 2

Execution

Status: failed
Hash: 96/5b09c4
Failure Reason: Error
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260603-050173b
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/5b09c4c492a665a5dca8f0adbc5c50
Native ID: nf-965b09c4c492a665a5dca8f0adbc5c50-9f4fb

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0b334e9ef3d7d6781 ( on-demand)

Runtime

Submitted: Jun 04, 2026 9:22:13 AM
Completed: Jun 04, 2026 9:22:50 AM
Total Duration: 36s

Phases

Queue: 2s
Execution: 34s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: e3/2e20a0
Failure Reason: Error
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260603-050173b
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/2e20a0c8e3789e4000fd432257cbe4
Native ID: nf-e32e20a0c8e3789e4000fd432257cbe4-fd010

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 32.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-04821fa74792929b2 ( spot)

Runtime

Submitted: Jun 04, 2026 9:21:13 AM
Completed: Jun 04, 2026 9:21:33 AM
Total Duration: 19s

Phases

Queue: 1s
Execution: 18s
Stage/Unstage: 0s