NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL (HCC1395_tumor_vs_HCC1395_BL) - sarek-regression-somacnv - Workflow Tracker

Runs
sarek-regression-somacnv
Tasks
SOMA_CNV_CALL (HCC1395_tumor_vs_HCC1395_BL)

Login

Task Info

Status: failed
Hash: 2298b614e524
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL
Tag: HCC1395_tumor_vs_HCC1395_BL
Attempts: 4

Attempt 4

Execution

Status: failed
Hash: b1/cee081
Failure Reason: Error
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260603-050173b
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/cee08170613d4dba8281984985f0b0
Native ID: nf-b1cee08170613d4dba8281984985f0b0-c1330

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 128.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0b334e9ef3d7d6781 ( on-demand)

Runtime

Submitted: Jun 04, 2026 9:24:13 AM
Completed: Jun 04, 2026 9:24:39 AM
Total Duration: 25s

Phases

Queue: 2s
Execution: 23s
Stage/Unstage: 0s

Attempt 3

Execution

Status: failed
Hash: b4/ae9de3
Failure Reason: Error
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260603-050173b
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/ae9de377c1ca0b9efc9e172e20e551
Native ID: nf-b4ae9de377c1ca0b9efc9e172e20e551-085dc

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 96.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0b334e9ef3d7d6781 ( on-demand)

Runtime

Submitted: Jun 04, 2026 9:23:13 AM
Completed: Jun 04, 2026 9:23:39 AM
Total Duration: 25s

Phases

Queue: 2s
Execution: 23s
Stage/Unstage: 0s

Attempt 2

Execution

Status: failed
Hash: 3b/5c960f
Failure Reason: Error
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260603-050173b
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/5c960f4d7edcc40cd4e168b1d04682
Native ID: nf-3b5c960f4d7edcc40cd4e168b1d04682-1089c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0b334e9ef3d7d6781 ( on-demand)

Runtime

Submitted: Jun 04, 2026 9:22:13 AM
Completed: Jun 04, 2026 9:22:41 AM
Total Duration: 27s

Phases

Queue: 2s
Execution: 25s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: f2/c4c2c1
Failure Reason: Error
Exit Code: 1
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:20260603-050173b
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/c4c2c1719f1abb0b0e9cc6841038ba
Native ID: nf-f2c4c2c1719f1abb0b0e9cc6841038ba-8bc69

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 32.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-04821fa74792929b2 ( spot)

Runtime

Submitted: Jun 04, 2026 9:21:13 AM
Completed: Jun 04, 2026 9:21:27 AM
Total Duration: 13s

Phases

Queue: 1s
Execution: 12s
Stage/Unstage: 0s