[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recal.bam.bai
Loaded 735874 sites across 3366 contigs
Reads: 0 total, 0 skipped (flags/unmapped), 0 no site overlap
Fragments: 0 total (0 paired, 0 singletons, 0 discordant, 0 orphans)
Loaded 735874 sites across 3366 contigs
Sites: 735874 total, 0 with data, 0 output (depth>=10)
Reads: 3618686 total, 765 skipped (flags/unmapped), 219919 no site overlap
Fragments: 1960378 total (1437624 paired, 18 singletons, 0 discordant, 522736 orphans)
Sites: 735874 total, 37843 with data, 37072 output (depth>=10)