File Info
- Filename
- 1029_0W2.tnseq.orientation_data.tsv
- Full Path
- s3://ai-pipelines-experiment/chnobles/nf_sarek_somacnv_functional_v2/results/variant_calling/tnseq/1029_0W2/1029_0W2.tnseq.orientation_data.tsv
- Size
- 9.0 KB
- Workflow Run
- sarek-somacnv-functional-v2
- Published
- Jun 04, 2026 9:17 AM
Content
View in new tab| #<METADATA>SAMPLE=1029_0W2-T1-TDNA-1_A23KCGYLT4_1 | |||||||||||||||
| context | rev_comp | f1r2_a | f1r2_c | f1r2_g | f1r2_t | f2r1_a | f2r1_c | f2r1_g | f2r1_t | hom_ref | germline_het | somatic_het | hom_var | num_examples | num_alt_examples |
| AAA | TTT | 0 | 1.7514e-05 | 0.000124323 | 1.05306e-05 | 0 | 1.36006e-05 | 4.07759e-05 | 1.02875e-05 | 0.998953 | 9.01393e-05 | 0.000591004 | 0.000148957 | 1450589 | 172203 |
| AAC | GTT | 0 | 9.8337e-06 | 0.000249196 | 6.16134e-06 | 0 | 1.83224e-05 | 2.9069e-05 | 1.02894e-05 | 0.998227 | 0.000128493 | 0.000998081 | 0.000323397 | 877797 | 103584 |
| AAG | CTT | 0 | 3.06825e-06 | 0.000155801 | 8.25798e-06 | 0 | 7.75846e-06 | 6.43978e-05 | 1.23208e-05 | 0.998707 | 0.00013985 | 0.000670832 | 0.000230785 | 1422427 | 211138 |
| AAT | ATT | 0 | 8.49442e-06 | 0.00039053 | 1.42353e-05 | 0 | 3.95083e-05 | 5.3641e-05 | 1.64079e-05 | 0.998093 | 0.000195869 | 0.000927767 | 0.00026078 | 989609 | 113981 |
| ACA | TGT | 0.000153353 | 0 | 2.3101e-05 | 0.0176254 | 2.29786e-05 | 0 | 8.30158e-06 | 0.000543762 | 0.979874 | 6.14819e-05 | 0.00143543 | 0.000252058 | 1225641 | 419993 |
| ACC | GGT | 3.10766e-05 | 0 | 7.54628e-05 | 0.0164635 | 3.51214e-06 | 0 | 3.89201e-06 | 0.000205431 | 0.981794 | 0.000141115 | 0.00109098 | 0.000191448 | 1018536 | 338992 |
| ACG | CGT | 1.82333e-05 | 0 | 6.88333e-06 | 0.114585 | 3.83233e-06 | 0 | 5.01383e-07 | 0.000956139 | 0.877244 | 0.00147095 | 0.00439461 | 0.00131979 | 431968 | 228139 |
| ACT | AGT | 4.66199e-05 | 0 | 8.14945e-05 | 0.0168156 | 1.84531e-05 | 0 | 6.8797e-06 | 0.000453315 | 0.980963 | 0.000166893 | 0.00112661 | 0.000321381 | 989073 | 329285 |
| AGA | TCT | 0.000516482 | 3.27675e-06 | 0 | 1.03164e-05 | 0.00551791 | 2.6754e-05 | 0 | 1.71273e-05 | 0.992764 | 8.7813e-05 | 0.000906489 | 0.000149785 | 1474629 | 396943 |
| AGC | GCT | 0.000242218 | 2.1709e-06 | 0 | 3.31333e-06 | 0.0151964 | 2.79039e-05 | 0 | 1.9138e-05 | 0.9832 | 5.57012e-05 | 0.00109604 | 0.000157097 | 1445281 | 493919 |
| AGG | CCT | 0.000278337 | 2.68557e-06 | 0 | 1.05204e-05 | 0.0107254 | 5.48743e-05 | 0 | 3.41527e-05 | 0.987716 | 0.000147459 | 0.000856409 | 0.000173738 | 1574726 | 495714 |
| AGT | ACT | 0.000453315 | 6.8797e-06 | 0 | 1.84531e-05 | 0.0168156 | 8.14945e-05 | 0 | 4.66199e-05 | 0.980963 | 0.000166893 | 0.00112661 | 0.000321381 | 989073 | 329285 |
| ATA | TAT | 9.83699e-05 | 7.23514e-05 | 0.000241161 | 0 | 1.7424e-05 | 0.000482644 | 9.27962e-06 | 0 | 0.99646 | 9.21378e-05 | 0.00213208 | 0.000394816 | 697214 | 93527 |
| ATC | GAT | 8.16265e-06 | 5.23434e-05 | 3.48999e-05 | 0 | 7.18122e-06 | 0.000514574 | 7.25201e-06 | 0 | 0.998176 | 5.75299e-05 | 0.000909147 | 0.00023268 | 997287 | 120190 |
| ATG | CAT | 1.67077e-05 | 3.63921e-05 | 0.000121567 | 0 | 8.45436e-06 | 0.000347684 | 1.0481e-05 | 0 | 0.997256 | 0.00033932 | 0.00126831 | 0.00059486 | 1248475 | 148505 |
| ATT | AAT | 1.64079e-05 | 5.3641e-05 | 3.95083e-05 | 0 | 1.42353e-05 | 0.00039053 | 8.49442e-06 | 0 | 0.998093 | 0.000195869 | 0.000927767 | 0.00026078 | 989609 | 113981 |
| CAA | TTG | 0 | 4.45272e-06 | 0.000102343 | 6.32203e-06 | 0 | 1.59389e-05 | 4.14831e-05 | 4.99036e-06 | 0.998639 | 0.000180061 | 0.000644084 | 0.000361568 | 1195793 | 154341 |
| CAC | GTG | 0 | 1.20328e-05 | 0.000175024 | 1.41221e-05 | 0 | 5.20671e-05 | 6.93034e-05 | 2.51884e-05 | 0.997865 | 0.00018602 | 0.00112604 | 0.000475607 | 1251129 | 160568 |
| CAG | CTG | 0 | 6.57169e-06 | 0.00010123 | 6.43025e-06 | 0 | 8.85934e-06 | 8.12625e-05 | 8.67906e-06 | 0.998322 | 0.000233168 | 0.000764057 | 0.00046736 | 2038962 | 350314 |
| CAT | ATG | 0 | 1.0481e-05 | 0.000347684 | 8.45436e-06 | 0 | 0.000121567 | 3.63921e-05 | 1.67077e-05 | 0.997256 | 0.00033932 | 0.00126831 | 0.00059486 | 1248475 | 148505 |
| CCA | TGG | 7.32253e-05 | 0 | 2.66297e-06 | 0.00650433 | 2.66638e-06 | 0 | 1.55561e-06 | 0.00021235 | 0.992313 | 5.5473e-05 | 0.000722461 | 0.000112585 | 1741792 | 521712 |
| CCC | GGG | 1.54399e-05 | 0 | 3.6803e-05 | 0.0102064 | 8.03106e-06 | 0 | 1.43071e-06 | 0.000102674 | 0.98837 | 0.00012412 | 0.000946298 | 0.000189126 | 1394101 | 443542 |
| CCG | CGG | 5.26563e-06 | 0 | 5.43867e-06 | 0.0736624 | 1.60876e-05 | 0 | 3.51219e-06 | 0.00025999 | 0.921274 | 0.00136557 | 0.00256357 | 0.000844111 | 744519 | 358892 |
| CCT | AGG | 3.41527e-05 | 0 | 5.48743e-05 | 0.0107254 | 1.05204e-05 | 0 | 2.68557e-06 | 0.000278337 | 0.987716 | 0.000147459 | 0.000856409 | 0.000173738 | 1574726 | 495714 |
| CGA | TCG | 0.000346259 | 4.75504e-06 | 0 | 9.8344e-07 | 0.102173 | 4.24559e-06 | 0 | 8.8909e-06 | 0.893558 | 0.000784349 | 0.00247811 | 0.000641304 | 454191 | 218120 |
| CGC | GCG | 0.00196266 | 9.81996e-07 | 0 | 4.72933e-06 | 0.0420172 | 2.07372e-06 | 0 | 1.31483e-06 | 0.951407 | 0.000589334 | 0.00337138 | 0.000643322 | 637432 | 304597 |
| CGG | CCG | 0.00025999 | 3.51219e-06 | 0 | 1.60876e-05 | 0.0736624 | 5.43867e-06 | 0 | 5.26563e-06 | 0.921274 | 0.00136557 | 0.00256357 | 0.000844111 | 744519 | 358892 |
| CGT | ACG | 0.000956139 | 5.01383e-07 | 0 | 3.83233e-06 | 0.114585 | 6.88333e-06 | 0 | 1.82333e-05 | 0.877244 | 0.00147095 | 0.00439461 | 0.00131979 | 431968 | 228139 |
| CTA | TAG | 1.91442e-05 | 9.07051e-05 | 1.26678e-05 | 0 | 1.77674e-05 | 0.000335424 | 4.08859e-06 | 0 | 0.997761 | 7.32635e-05 | 0.001317 | 0.000368747 | 569673 | 90935 |
| CTC | GAG | 1.67291e-05 | 0.00010096 | 1.01863e-05 | 0 | 1.19285e-05 | 0.000201476 | 4.34173e-06 | 0 | 0.998504 | 3.45007e-05 | 0.000877566 | 0.000238189 | 1474700 | 243912 |
| CTG | CAG | 8.67906e-06 | 8.12625e-05 | 8.85934e-06 | 0 | 6.43025e-06 | 0.00010123 | 6.57169e-06 | 0 | 0.998322 | 0.000233168 | 0.000764057 | 0.00046736 | 2038962 | 350314 |
| CTT | AAG | 1.23208e-05 | 6.43978e-05 | 7.75846e-06 | 0 | 8.25798e-06 | 0.000155801 | 3.06825e-06 | 0 | 0.998707 | 0.00013985 | 0.000670832 | 0.000230785 | 1422427 | 211138 |
| GAA | TTC | 0 | 4.3402e-06 | 0.000136692 | 9.05591e-06 | 0 | 1.79929e-05 | 2.20609e-05 | 9.49035e-06 | 0.999016 | 5.85588e-05 | 0.000556101 | 0.000169554 | 1427342 | 172629 |
| GAC | GTC | 0 | 8.91086e-06 | 0.000292422 | 1.29662e-06 | 0 | 2.0931e-05 | 5.17484e-05 | 4.78385e-06 | 0.998497 | 8.87252e-05 | 0.000753303 | 0.000281347 | 936695 | 121418 |
| GAG | CTC | 0 | 4.34173e-06 | 0.000201476 | 1.19285e-05 | 0 | 1.01863e-05 | 0.00010096 | 1.67291e-05 | 0.998504 | 3.45007e-05 | 0.000877566 | 0.000238189 | 1474700 | 243912 |
| GAT | ATC | 0 | 7.25201e-06 | 0.000514574 | 7.18122e-06 | 0 | 3.48999e-05 | 5.23434e-05 | 8.16265e-06 | 0.998176 | 5.75299e-05 | 0.000909147 | 0.00023268 | 997287 | 120190 |
| GCA | TGC | 4.27088e-05 | 0 | 9.59409e-06 | 0.00425447 | 3.15066e-06 | 0 | 3.68574e-06 | 0.000612921 | 0.994011 | 9.7889e-05 | 0.000786436 | 0.000178233 | 1375732 | 428034 |
| GCC | GGC | 1.64953e-05 | 0 | 4.22058e-05 | 0.0100356 | 8.87566e-07 | 0 | 8.27258e-06 | 0.000274771 | 0.988587 | 0.000126515 | 0.000748664 | 0.000159566 | 1498442 | 498467 |
| GCG | CGC | 1.31483e-06 | 0 | 2.07372e-06 | 0.0420172 | 4.72933e-06 | 0 | 9.81996e-07 | 0.00196266 | 0.951407 | 0.000589334 | 0.00337138 | 0.000643322 | 637432 | 304597 |
| GCT | AGC | 1.9138e-05 | 0 | 2.79039e-05 | 0.0151964 | 3.31333e-06 | 0 | 2.1709e-06 | 0.000242218 | 0.9832 | 5.57012e-05 | 0.00109604 | 0.000157097 | 1445281 | 493919 |
| GGA | TCC | 0.000289573 | 2.43586e-06 | 0 | 3.25529e-06 | 0.00166831 | 2.4978e-05 | 0 | 8.28927e-06 | 0.997093 | 0.000127149 | 0.000671019 | 0.000112222 | 1489213 | 351757 |
| GGC | GCC | 0.000274771 | 8.27258e-06 | 0 | 8.87566e-07 | 0.0100356 | 4.22058e-05 | 0 | 1.64953e-05 | 0.988587 | 0.000126515 | 0.000748664 | 0.000159566 | 1498442 | 498467 |
| GGG | CCC | 0.000102674 | 1.43071e-06 | 0 | 8.03106e-06 | 0.0102064 | 3.6803e-05 | 0 | 1.54399e-05 | 0.98837 | 0.00012412 | 0.000946298 | 0.000189126 | 1394101 | 443542 |
| GGT | ACC | 0.000205431 | 3.89201e-06 | 0 | 3.51214e-06 | 0.0164635 | 7.54628e-05 | 0 | 3.10766e-05 | 0.981794 | 0.000141115 | 0.00109098 | 0.000191448 | 1018536 | 338992 |
| GTA | TAC | 2.1149e-05 | 4.29945e-05 | 0.000109976 | 0 | 2.53182e-06 | 0.000159409 | 1.90023e-05 | 0 | 0.998057 | 5.84775e-05 | 0.00121846 | 0.000310562 | 620547 | 84989 |
| GTC | GAC | 4.78385e-06 | 5.17484e-05 | 2.0931e-05 | 0 | 1.29662e-06 | 0.000292422 | 8.91086e-06 | 0 | 0.998497 | 8.87252e-05 | 0.000753303 | 0.000281347 | 936695 | 121418 |
| GTG | CAC | 2.51884e-05 | 6.93034e-05 | 5.20671e-05 | 0 | 1.41221e-05 | 0.000175024 | 1.20328e-05 | 0 | 0.997865 | 0.00018602 | 0.00112604 | 0.000475607 | 1251129 | 160568 |
| GTT | AAC | 1.02894e-05 | 2.9069e-05 | 1.83224e-05 | 0 | 6.16134e-06 | 0.000249196 | 9.8337e-06 | 0 | 0.998227 | 0.000128493 | 0.000998081 | 0.000323397 | 877797 | 103584 |
| TAA | TTA | 0 | 1.57215e-05 | 0.000180217 | 1.7789e-05 | 0 | 1.42003e-05 | 5.45085e-05 | 1.44205e-05 | 0.998367 | 6.3041e-05 | 0.00102994 | 0.000243375 | 668065 | 93175 |
| TAC | GTA | 0 | 1.90023e-05 | 0.000159409 | 2.53182e-06 | 0 | 0.000109976 | 4.29945e-05 | 2.1149e-05 | 0.998057 | 5.84775e-05 | 0.00121846 | 0.000310562 | 620547 | 84989 |
| TAG | CTA | 0 | 4.08859e-06 | 0.000335424 | 1.77674e-05 | 0 | 1.26678e-05 | 9.07051e-05 | 1.91442e-05 | 0.997761 | 7.32635e-05 | 0.001317 | 0.000368747 | 569673 | 90935 |
| TAT | ATA | 0 | 9.27962e-06 | 0.000482644 | 1.7424e-05 | 0 | 0.000241161 | 7.23514e-05 | 9.83699e-05 | 0.99646 | 9.21378e-05 | 0.00213208 | 0.000394816 | 697214 | 93527 |
| TCA | TGA | 4.56262e-05 | 0 | 1.11256e-05 | 0.0025062 | 1.14862e-05 | 0 | 7.06531e-06 | 0.000495621 | 0.996063 | 7.33176e-05 | 0.000672774 | 0.000113884 | 1370690 | 352399 |
| TCC | GGA | 8.28927e-06 | 0 | 2.4978e-05 | 0.00166831 | 3.25529e-06 | 0 | 2.43586e-06 | 0.000289573 | 0.997093 | 0.000127149 | 0.000671019 | 0.000112222 | 1489213 | 351757 |
| TCG | CGA | 8.8909e-06 | 0 | 4.24559e-06 | 0.102173 | 9.8344e-07 | 0 | 4.75504e-06 | 0.000346259 | 0.893558 | 0.000784349 | 0.00247811 | 0.000641304 | 454191 | 218120 |
| TCT | AGA | 1.71273e-05 | 0 | 2.6754e-05 | 0.00551791 | 1.03164e-05 | 0 | 3.27675e-06 | 0.000516482 | 0.992764 | 8.7813e-05 | 0.000906489 | 0.000149785 | 1474629 | 396943 |
| TGA | TCA | 0.000495621 | 7.06531e-06 | 0 | 1.14862e-05 | 0.0025062 | 1.11256e-05 | 0 | 4.56262e-05 | 0.996063 | 7.33176e-05 | 0.000672774 | 0.000113884 | 1370690 | 352399 |
| TGC | GCA | 0.000612921 | 3.68574e-06 | 0 | 3.15066e-06 | 0.00425447 | 9.59409e-06 | 0 | 4.27088e-05 | 0.994011 | 9.7889e-05 | 0.000786436 | 0.000178233 | 1375732 | 428034 |
| TGG | CCA | 0.00021235 | 1.55561e-06 | 0 | 2.66638e-06 | 0.00650433 | 2.66297e-06 | 0 | 7.32253e-05 | 0.992313 | 5.5473e-05 | 0.000722461 | 0.000112585 | 1741792 | 521712 |
| TGT | ACA | 0.000543762 | 8.30158e-06 | 0 | 2.29786e-05 | 0.0176254 | 2.3101e-05 | 0 | 0.000153353 | 0.979874 | 6.14819e-05 | 0.00143543 | 0.000252058 | 1225641 | 419993 |
| TTA | TAA | 1.44205e-05 | 5.45085e-05 | 1.42003e-05 | 0 | 1.7789e-05 | 0.000180217 | 1.57215e-05 | 0 | 0.998367 | 6.3041e-05 | 0.00102994 | 0.000243375 | 668065 | 93175 |
| TTC | GAA | 9.49035e-06 | 2.20609e-05 | 1.79929e-05 | 0 | 9.05591e-06 | 0.000136692 | 4.3402e-06 | 0 | 0.999016 | 5.85588e-05 | 0.000556101 | 0.000169554 | 1427342 | 172629 |
| TTG | CAA | 4.99036e-06 | 4.14831e-05 | 1.59389e-05 | 0 | 6.32203e-06 | 0.000102343 | 4.45272e-06 | 0 | 0.998639 | 0.000180061 | 0.000644084 | 0.000361568 | 1195793 | 154341 |
| TTT | AAA | 1.02875e-05 | 4.07759e-05 | 1.36006e-05 | 0 | 1.05306e-05 | 0.000124323 | 1.7514e-05 | 0 | 0.998953 | 9.01393e-05 | 0.000591004 | 0.000148957 | 1450589 | 172203 |
66 rows