File Info
- Filename
- 1029_16G.tnseq.orientation_data.tsv
- Full Path
- s3://ai-pipelines-experiment/chnobles/nf_sarek_somacnv_functional_v2/results/variant_calling/tnseq/1029_16G/1029_16G.tnseq.orientation_data.tsv
- Size
- 9.0 KB
- Workflow Run
- sarek-somacnv-functional-v2
- Published
- Jun 04, 2026 9:17 AM
Content
View in new tab| #<METADATA>SAMPLE=1029_16G-T1-TDNA-1_B23KFCWLT4_1 | |||||||||||||||
| context | rev_comp | f1r2_a | f1r2_c | f1r2_g | f1r2_t | f2r1_a | f2r1_c | f2r1_g | f2r1_t | hom_ref | germline_het | somatic_het | hom_var | num_examples | num_alt_examples |
| AAA | TTT | 0 | 6.12589e-06 | 5.86027e-05 | 9.74968e-06 | 0 | 2.78704e-06 | 2.66897e-05 | 4.05712e-06 | 0.999168 | 3.87233e-05 | 0.000540376 | 0.000144467 | 1451086 | 161194 |
| AAC | GTT | 0 | 4.93009e-06 | 0.000106072 | 4.92458e-06 | 0 | 8.52697e-06 | 2.70703e-05 | 7.35505e-06 | 0.998594 | 6.20097e-05 | 0.000906681 | 0.000278134 | 878048 | 90661 |
| AAG | CTT | 0 | 8.53415e-07 | 5.61597e-05 | 3.17734e-06 | 0 | 2.82995e-06 | 5.28609e-05 | 2.34875e-06 | 0.998966 | 6.03194e-05 | 0.000666181 | 0.000189746 | 1422903 | 201537 |
| AAT | ATT | 0 | 1.61851e-06 | 0.000163541 | 5.8481e-06 | 0 | 2.8343e-05 | 7.48523e-05 | 1.03285e-05 | 0.998472 | 0.000104805 | 0.000900707 | 0.000237474 | 989942 | 104372 |
| ACA | TGT | 5.13051e-05 | 0 | 5.09042e-06 | 0.00897528 | 2.23763e-05 | 0 | 3.35432e-06 | 0.000153228 | 0.989294 | 1.72621e-05 | 0.00124357 | 0.000234635 | 1226144 | 426638 |
| ACC | GGT | 1.30899e-05 | 0 | 3.54379e-05 | 0.0067962 | 2.62839e-06 | 0 | 8.86993e-06 | 5.31892e-05 | 0.991849 | 4.05201e-05 | 0.00102236 | 0.000178916 | 1018952 | 314647 |
| ACG | CGT | 4.50625e-05 | 0 | 2.25166e-06 | 0.0720131 | 5.29168e-06 | 0 | 3.1481e-07 | 0.000306907 | 0.922074 | 0.00127067 | 0.00305547 | 0.00122658 | 432066 | 210572 |
| ACT | AGT | 9.50209e-06 | 0 | 3.46958e-05 | 0.00788515 | 7.83281e-06 | 0 | 2.43235e-05 | 0.000109478 | 0.990589 | 4.20735e-05 | 0.00100766 | 0.000290095 | 989401 | 328399 |
| AGA | TCT | 0.000203106 | 2.81898e-06 | 0 | 6.49215e-06 | 0.00248639 | 1.22545e-05 | 0 | 8.54952e-06 | 0.996273 | 1.2357e-05 | 0.000838127 | 0.00015681 | 1475132 | 400097 |
| AGC | GCT | 0.000227218 | 6.63524e-06 | 0 | 6.77189e-06 | 0.00643783 | 1.20839e-05 | 0 | 1.16708e-05 | 0.992055 | 4.62767e-06 | 0.00107763 | 0.000160037 | 1445767 | 465150 |
| AGG | CCT | 0.000108449 | 9.14491e-06 | 0 | 8.07398e-06 | 0.00412707 | 2.62452e-05 | 0 | 1.26753e-05 | 0.994696 | 5.96391e-05 | 0.000795946 | 0.000156912 | 1575343 | 457338 |
| AGT | ACT | 0.000109478 | 2.43235e-05 | 0 | 7.83281e-06 | 0.00788515 | 3.46958e-05 | 0 | 9.50209e-06 | 0.990589 | 4.20735e-05 | 0.00100766 | 0.000290095 | 989401 | 328399 |
| ATA | TAT | 2.48531e-05 | 4.2231e-05 | 0.000141009 | 0 | 1.49648e-05 | 0.000253677 | 2.65285e-05 | 0 | 0.997176 | 5.66621e-05 | 0.001894 | 0.000370057 | 697486 | 86678 |
| ATC | GAT | 5.77207e-06 | 0.000103717 | 2.32336e-05 | 0 | 1.32858e-06 | 0.000235094 | 1.63579e-06 | 0 | 0.998491 | 2.85777e-05 | 0.000917583 | 0.000192541 | 997599 | 105108 |
| ATG | CAT | 1.70713e-06 | 5.58925e-05 | 9.80986e-05 | 0 | 2.0087e-06 | 0.000142543 | 1.54088e-05 | 0 | 0.997689 | 0.000210435 | 0.00125985 | 0.000525451 | 1249016 | 129889 |
| ATT | AAT | 1.03285e-05 | 7.48523e-05 | 2.8343e-05 | 0 | 5.8481e-06 | 0.000163541 | 1.61851e-06 | 0 | 0.998472 | 0.000104805 | 0.000900707 | 0.000237474 | 989942 | 104372 |
| CAA | TTG | 0 | 4.02924e-06 | 3.86037e-05 | 5.3801e-06 | 0 | 3.6159e-06 | 1.55815e-05 | 4.14551e-06 | 0.9989 | 9.75557e-05 | 0.000639656 | 0.000291664 | 1196122 | 143626 |
| CAC | GTG | 0 | 1.81897e-05 | 7.87994e-05 | 8.93106e-06 | 0 | 3.13978e-05 | 2.24452e-05 | 1.38918e-05 | 0.998251 | 9.0859e-05 | 0.00107676 | 0.00040754 | 1251662 | 132861 |
| CAG | CTG | 0 | 4.50505e-06 | 4.98342e-05 | 8.04354e-06 | 0 | 9.65181e-06 | 4.66896e-05 | 6.16396e-06 | 0.998552 | 0.000160921 | 0.000762519 | 0.000399541 | 2039626 | 321220 |
| CAT | ATG | 0 | 1.54088e-05 | 0.000142543 | 2.0087e-06 | 0 | 9.80986e-05 | 5.58925e-05 | 1.70713e-06 | 0.997689 | 0.000210435 | 0.00125985 | 0.000525451 | 1249016 | 129889 |
| CCA | TGG | 2.46351e-05 | 0 | 2.08835e-06 | 0.00223262 | 5.04158e-06 | 0 | 7.83249e-08 | 4.98906e-05 | 0.996893 | 1.62485e-05 | 0.000660721 | 0.000115249 | 1742378 | 486475 |
| CCC | GGG | 8.46491e-06 | 0 | 2.33474e-05 | 0.00289767 | 1.79389e-07 | 0 | 5.19044e-06 | 5.80362e-05 | 0.995866 | 4.24721e-05 | 0.000933042 | 0.000165343 | 1394535 | 384303 |
| CCG | CGG | 1.40332e-05 | 0 | 2.06642e-06 | 0.0358602 | 2.05913e-05 | 0 | 4.5619e-06 | 9.05054e-05 | 0.96016 | 0.000910339 | 0.00210414 | 0.000833269 | 744677 | 317812 |
| CCT | AGG | 1.26753e-05 | 0 | 2.62452e-05 | 0.00412707 | 8.07398e-06 | 0 | 9.14491e-06 | 0.000108449 | 0.994696 | 5.96391e-05 | 0.000795946 | 0.000156912 | 1575343 | 457338 |
| CGA | TCG | 0.000180572 | 6.18943e-06 | 0 | 4.62658e-07 | 0.0599628 | 2.47505e-07 | 0 | 2.79024e-06 | 0.936673 | 0.000489601 | 0.00203899 | 0.000645128 | 454311 | 203380 |
| CGC | GCG | 0.000891425 | 5.60568e-06 | 0 | 6.10206e-06 | 0.0228587 | 3.31734e-06 | 0 | 2.8616e-07 | 0.97257 | 0.000463695 | 0.00258637 | 0.000614266 | 637622 | 275097 |
| CGG | CCG | 9.05054e-05 | 4.5619e-06 | 0 | 2.05913e-05 | 0.0358602 | 2.06642e-06 | 0 | 1.40332e-05 | 0.96016 | 0.000910339 | 0.00210414 | 0.000833269 | 744677 | 317812 |
| CGT | ACG | 0.000306907 | 3.1481e-07 | 0 | 5.29168e-06 | 0.0720131 | 2.25166e-06 | 0 | 4.50625e-05 | 0.922074 | 0.00127067 | 0.00305547 | 0.00122658 | 432066 | 210572 |
| CTA | TAG | 7.54553e-06 | 5.98557e-05 | 6.52856e-06 | 0 | 5.28621e-06 | 0.00024652 | 2.6616e-07 | 0 | 0.998059 | 3.67792e-05 | 0.00128704 | 0.00029136 | 569865 | 86969 |
| CTC | GAG | 9.06202e-06 | 6.23721e-05 | 9.33685e-06 | 0 | 4.16704e-06 | 0.000101251 | 5.49576e-07 | 0 | 0.998727 | 1.70035e-05 | 0.000883677 | 0.000185357 | 1475143 | 218354 |
| CTG | CAG | 6.16396e-06 | 4.66896e-05 | 9.65181e-06 | 0 | 8.04354e-06 | 4.98342e-05 | 4.50505e-06 | 0 | 0.998552 | 0.000160921 | 0.000762519 | 0.000399541 | 2039626 | 321220 |
| CTT | AAG | 2.34875e-06 | 5.28609e-05 | 2.82995e-06 | 0 | 3.17734e-06 | 5.61597e-05 | 8.53415e-07 | 0 | 0.998966 | 6.03194e-05 | 0.000666181 | 0.000189746 | 1422903 | 201537 |
| GAA | TTC | 0 | 2.35893e-06 | 5.14524e-05 | 2.09401e-06 | 0 | 7.89405e-06 | 2.70519e-05 | 2.44121e-06 | 0.999208 | 2.75511e-05 | 0.000530518 | 0.000140187 | 1427852 | 157646 |
| GAC | GTC | 0 | 3.39464e-06 | 0.000124098 | 3.47595e-06 | 0 | 1.30874e-05 | 3.07796e-05 | 3.4208e-06 | 0.998738 | 4.65119e-05 | 0.000767835 | 0.000269711 | 937066 | 102722 |
| GAG | CTC | 0 | 5.49576e-07 | 0.000101251 | 4.16704e-06 | 0 | 9.33685e-06 | 6.23721e-05 | 9.06202e-06 | 0.998727 | 1.70035e-05 | 0.000883677 | 0.000185357 | 1475143 | 218354 |
| GAT | ATC | 0 | 1.63579e-06 | 0.000235094 | 1.32858e-06 | 0 | 2.32336e-05 | 0.000103717 | 5.77207e-06 | 0.998491 | 2.85777e-05 | 0.000917583 | 0.000192541 | 997599 | 105108 |
| GCA | TGC | 1.4863e-05 | 0 | 2.57843e-06 | 0.001973 | 3.23083e-06 | 0 | 5.72013e-06 | 0.000236561 | 0.996858 | 2.34239e-05 | 0.000737849 | 0.000145125 | 1376210 | 421530 |
| GCC | GGC | 1.8048e-06 | 0 | 2.28534e-05 | 0.00399734 | 4.81466e-06 | 0 | 7.51898e-06 | 0.000105086 | 0.994993 | 3.24076e-05 | 0.000696384 | 0.000139266 | 1498888 | 451123 |
| GCG | CGC | 2.8616e-07 | 0 | 3.31734e-06 | 0.0228587 | 6.10206e-06 | 0 | 5.60568e-06 | 0.000891425 | 0.97257 | 0.000463695 | 0.00258637 | 0.000614266 | 637622 | 275097 |
| GCT | AGC | 1.16708e-05 | 0 | 1.20839e-05 | 0.00643783 | 6.77189e-06 | 0 | 6.63524e-06 | 0.000227218 | 0.992055 | 4.62767e-06 | 0.00107763 | 0.000160037 | 1445767 | 465150 |
| GGA | TCC | 7.98342e-05 | 2.37265e-06 | 0 | 2.72976e-06 | 0.000491418 | 1.26648e-05 | 0 | 4.72483e-06 | 0.998618 | 2.25881e-05 | 0.000644146 | 0.000121555 | 1489807 | 328579 |
| GGC | GCC | 0.000105086 | 7.51898e-06 | 0 | 4.81466e-06 | 0.00399734 | 2.28534e-05 | 0 | 1.8048e-06 | 0.994993 | 3.24076e-05 | 0.000696384 | 0.000139266 | 1498888 | 451123 |
| GGG | CCC | 5.80362e-05 | 5.19044e-06 | 0 | 1.79389e-07 | 0.00289767 | 2.33474e-05 | 0 | 8.46491e-06 | 0.995866 | 4.24721e-05 | 0.000933042 | 0.000165343 | 1394535 | 384303 |
| GGT | ACC | 5.31892e-05 | 8.86993e-06 | 0 | 2.62839e-06 | 0.0067962 | 3.54379e-05 | 0 | 1.30899e-05 | 0.991849 | 4.05201e-05 | 0.00102236 | 0.000178916 | 1018952 | 314647 |
| GTA | TAC | 1.36947e-05 | 3.33143e-05 | 6.91537e-05 | 0 | 6.19391e-06 | 7.04535e-05 | 1.70936e-05 | 0 | 0.998316 | 3.35031e-05 | 0.00117036 | 0.000270617 | 620787 | 76332 |
| GTC | GAC | 3.4208e-06 | 3.07796e-05 | 1.30874e-05 | 0 | 3.47595e-06 | 0.000124098 | 3.39464e-06 | 0 | 0.998738 | 4.65119e-05 | 0.000767835 | 0.000269711 | 937066 | 102722 |
| GTG | CAC | 1.38918e-05 | 2.24452e-05 | 3.13978e-05 | 0 | 8.93106e-06 | 7.87994e-05 | 1.81897e-05 | 0 | 0.998251 | 9.0859e-05 | 0.00107676 | 0.00040754 | 1251662 | 132861 |
| GTT | AAC | 7.35505e-06 | 2.70703e-05 | 8.52697e-06 | 0 | 4.92458e-06 | 0.000106072 | 4.93009e-06 | 0 | 0.998594 | 6.20097e-05 | 0.000906681 | 0.000278134 | 878048 | 90661 |
| TAA | TTA | 0 | 8.18701e-06 | 9.47574e-05 | 1.12345e-05 | 0 | 1.45481e-05 | 1.57653e-05 | 3.66584e-06 | 0.998656 | 4.84785e-05 | 0.000962486 | 0.000185079 | 668354 | 90851 |
| TAC | GTA | 0 | 1.70936e-05 | 7.04535e-05 | 6.19391e-06 | 0 | 6.91537e-05 | 3.33143e-05 | 1.36947e-05 | 0.998316 | 3.35031e-05 | 0.00117036 | 0.000270617 | 620787 | 76332 |
| TAG | CTA | 0 | 2.6616e-07 | 0.00024652 | 5.28621e-06 | 0 | 6.52856e-06 | 5.98557e-05 | 7.54553e-06 | 0.998059 | 3.67792e-05 | 0.00128704 | 0.00029136 | 569865 | 86969 |
| TAT | ATA | 0 | 2.65285e-05 | 0.000253677 | 1.49648e-05 | 0 | 0.000141009 | 4.2231e-05 | 2.48531e-05 | 0.997176 | 5.66621e-05 | 0.001894 | 0.000370057 | 697486 | 86678 |
| TCA | TGA | 5.09206e-06 | 0 | 6.88215e-06 | 0.00104896 | 1.03611e-05 | 0 | 2.72164e-06 | 0.000136015 | 0.998058 | 2.28668e-05 | 0.00060029 | 0.000109305 | 1371248 | 358529 |
| TCC | GGA | 4.72483e-06 | 0 | 1.26648e-05 | 0.000491418 | 2.72976e-06 | 0 | 2.37265e-06 | 7.98342e-05 | 0.998618 | 2.25881e-05 | 0.000644146 | 0.000121555 | 1489807 | 328579 |
| TCG | CGA | 2.79024e-06 | 0 | 2.47505e-07 | 0.0599628 | 4.62658e-07 | 0 | 6.18943e-06 | 0.000180572 | 0.936673 | 0.000489601 | 0.00203899 | 0.000645128 | 454311 | 203380 |
| TCT | AGA | 8.54952e-06 | 0 | 1.22545e-05 | 0.00248639 | 6.49215e-06 | 0 | 2.81898e-06 | 0.000203106 | 0.996273 | 1.2357e-05 | 0.000838127 | 0.00015681 | 1475132 | 400097 |
| TGA | TCA | 0.000136015 | 2.72164e-06 | 0 | 1.03611e-05 | 0.00104896 | 6.88215e-06 | 0 | 5.09206e-06 | 0.998058 | 2.28668e-05 | 0.00060029 | 0.000109305 | 1371248 | 358529 |
| TGC | GCA | 0.000236561 | 5.72013e-06 | 0 | 3.23083e-06 | 0.001973 | 2.57843e-06 | 0 | 1.4863e-05 | 0.996858 | 2.34239e-05 | 0.000737849 | 0.000145125 | 1376210 | 421530 |
| TGG | CCA | 4.98906e-05 | 7.83249e-08 | 0 | 5.04158e-06 | 0.00223262 | 2.08835e-06 | 0 | 2.46351e-05 | 0.996893 | 1.62485e-05 | 0.000660721 | 0.000115249 | 1742378 | 486475 |
| TGT | ACA | 0.000153228 | 3.35432e-06 | 0 | 2.23763e-05 | 0.00897528 | 5.09042e-06 | 0 | 5.13051e-05 | 0.989294 | 1.72621e-05 | 0.00124357 | 0.000234635 | 1226144 | 426638 |
| TTA | TAA | 3.66584e-06 | 1.57653e-05 | 1.45481e-05 | 0 | 1.12345e-05 | 9.47574e-05 | 8.18701e-06 | 0 | 0.998656 | 4.84785e-05 | 0.000962486 | 0.000185079 | 668354 | 90851 |
| TTC | GAA | 2.44121e-06 | 2.70519e-05 | 7.89405e-06 | 0 | 2.09401e-06 | 5.14524e-05 | 2.35893e-06 | 0 | 0.999208 | 2.75511e-05 | 0.000530518 | 0.000140187 | 1427852 | 157646 |
| TTG | CAA | 4.14551e-06 | 1.55815e-05 | 3.6159e-06 | 0 | 5.3801e-06 | 3.86037e-05 | 4.02924e-06 | 0 | 0.9989 | 9.75557e-05 | 0.000639656 | 0.000291664 | 1196122 | 143626 |
| TTT | AAA | 4.05712e-06 | 2.66897e-05 | 2.78704e-06 | 0 | 9.74968e-06 | 5.86027e-05 | 6.12589e-06 | 0 | 0.999168 | 3.87233e-05 | 0.000540376 | 0.000144467 | 1451086 | 161194 |
66 rows