File Info
- Filename
- 1029_11H.tnseq.orientation_data.tsv
- Full Path
- s3://ai-pipelines-experiment/chnobles/nf_sarek_somacnv_functional_v2/results/variant_calling/tnseq/1029_11H/1029_11H.tnseq.orientation_data.tsv
- Size
- 9.1 KB
- Workflow Run
- sarek-somacnv-functional-v2
- Published
- Jun 04, 2026 9:27 AM
Content
View in new tab| #<METADATA>SAMPLE=1029_11H-T1-TDNA-1_B23KFCWLT4_1 | |||||||||||||||
| context | rev_comp | f1r2_a | f1r2_c | f1r2_g | f1r2_t | f2r1_a | f2r1_c | f2r1_g | f2r1_t | hom_ref | germline_het | somatic_het | hom_var | num_examples | num_alt_examples |
| AAA | TTT | 0 | 8.66278e-06 | 5.96932e-05 | 8.17421e-06 | 0 | 6.44991e-06 | 2.60065e-05 | 8.50822e-06 | 0.999141 | 4.70585e-05 | 0.000562752 | 0.000131819 | 1449780 | 179857 |
| AAC | GTT | 0 | 7.28518e-06 | 0.000129198 | 8.67532e-06 | 0 | 8.04239e-06 | 2.30908e-05 | 6.14302e-06 | 0.998466 | 6.71084e-05 | 0.00100601 | 0.000278577 | 877209 | 105535 |
| AAG | CTT | 0 | 1.68834e-06 | 6.25532e-05 | 3.3597e-06 | 0 | 6.01832e-06 | 6.57301e-05 | 1.21791e-05 | 0.998859 | 6.71025e-05 | 0.000725302 | 0.000197058 | 1421706 | 231976 |
| AAT | ATT | 0 | 1.70605e-06 | 0.0001784 | 3.2026e-06 | 0 | 4.64965e-05 | 4.46836e-05 | 1.34577e-05 | 0.998458 | 0.000111823 | 0.000905722 | 0.000236341 | 988861 | 115816 |
| ACA | TGT | 6.60276e-05 | 0 | 1.19252e-05 | 0.000252087 | 0.000609528 | 0 | 4.06178e-06 | 7.8699e-05 | 0.997411 | 6.95177e-05 | 0.00126541 | 0.000232174 | 1225029 | 423149 |
| ACC | GGT | 1.72045e-05 | 0 | 4.90779e-05 | 0.000170479 | 0.000316116 | 0 | 8.99116e-06 | 2.47564e-05 | 0.998043 | 0.000100953 | 0.00109122 | 0.000178641 | 1018286 | 329836 |
| ACG | CGT | 2.45711e-05 | 0 | 1.55932e-06 | 0.00389774 | 0.000762827 | 0 | 6.34479e-07 | 0.000346364 | 0.989398 | 0.00101985 | 0.00328215 | 0.00126611 | 431886 | 201421 |
| ACT | AGT | 2.00505e-05 | 0 | 3.9421e-05 | 0.000212667 | 0.000244377 | 0 | 1.89123e-05 | 4.39083e-05 | 0.998055 | 0.000132726 | 0.000946706 | 0.000286064 | 988483 | 302852 |
| AGA | TCT | 0.000111305 | 5.77632e-06 | 0 | 0.000161721 | 0.000224857 | 1.05938e-05 | 0 | 1.14753e-05 | 0.99849 | 6.61268e-05 | 0.000780715 | 0.000137455 | 1474050 | 401802 |
| AGC | GCT | 0.000159715 | 7.36537e-06 | 0 | 0.000304301 | 0.000304405 | 1.43751e-05 | 0 | 3.52966e-06 | 0.997961 | 4.63293e-05 | 0.00105065 | 0.000148172 | 1444949 | 489220 |
| AGG | CCT | 5.21749e-05 | 6.31325e-06 | 0 | 0.000142943 | 0.000202495 | 3.36958e-05 | 0 | 2.55071e-05 | 0.998443 | 9.93627e-05 | 0.000832224 | 0.000162739 | 1574468 | 485957 |
| AGT | ACT | 4.39083e-05 | 1.89123e-05 | 0 | 0.000244377 | 0.000212667 | 3.9421e-05 | 0 | 2.00505e-05 | 0.998055 | 0.000132726 | 0.000946706 | 0.000286064 | 988483 | 302852 |
| ATA | TAT | 6.07224e-05 | 6.93765e-05 | 0.000132283 | 0 | 1.31074e-05 | 0.000302923 | 1.68731e-05 | 0 | 0.996971 | 7.64939e-05 | 0.00200803 | 0.000348852 | 696757 | 95346 |
| ATC | GAT | 4.05687e-06 | 7.73986e-05 | 3.50039e-05 | 0 | 2.37742e-06 | 0.000282782 | 2.32287e-06 | 0 | 0.99841 | 5.76569e-05 | 0.000937637 | 0.00019067 | 996733 | 123596 |
| ATG | CAT | 2.96997e-06 | 4.02669e-05 | 0.000117423 | 0 | 4.3325e-06 | 0.000215899 | 1.25196e-05 | 0 | 0.99749 | 0.000217712 | 0.00135691 | 0.00054232 | 1247888 | 153355 |
| ATT | AAT | 1.34577e-05 | 4.46836e-05 | 4.64965e-05 | 0 | 3.2026e-06 | 0.0001784 | 1.70605e-06 | 0 | 0.998458 | 0.000111823 | 0.000905722 | 0.000236341 | 988861 | 115816 |
| CAA | TTG | 0 | 4.32085e-06 | 6.26436e-05 | 4.46651e-06 | 0 | 1.27035e-05 | 2.29466e-05 | 6.89905e-06 | 0.998808 | 0.000133275 | 0.000660825 | 0.000283799 | 1194978 | 165091 |
| CAC | GTG | 0 | 1.0632e-05 | 0.000120997 | 4.90439e-06 | 0 | 4.19027e-05 | 4.6735e-05 | 7.14591e-06 | 0.998009 | 0.000108281 | 0.00125141 | 0.000398743 | 1250785 | 165263 |
| CAG | CTG | 0 | 7.3463e-06 | 6.26236e-05 | 7.14289e-06 | 0 | 8.20171e-06 | 5.07267e-05 | 3.86725e-06 | 0.998437 | 0.000158838 | 0.000895537 | 0.000368789 | 2038444 | 389937 |
| CAT | ATG | 0 | 1.25196e-05 | 0.000215899 | 4.3325e-06 | 0 | 0.000117423 | 4.02669e-05 | 2.96997e-06 | 0.99749 | 0.000217712 | 0.00135691 | 0.00054232 | 1247888 | 153355 |
| CCA | TGG | 3.60134e-05 | 0 | 3.98925e-06 | 0.0001317 | 0.000206953 | 0 | 5.46305e-07 | 1.71917e-05 | 0.998729 | 4.12457e-05 | 0.000712533 | 0.000121082 | 1741161 | 563714 |
| CCC | GGG | 1.93533e-05 | 0 | 2.50168e-05 | 0.000178931 | 0.000184669 | 0 | 3.82002e-06 | 2.23314e-05 | 0.998344 | 9.46511e-05 | 0.000960994 | 0.000165817 | 1394016 | 460497 |
| CCG | CGG | 1.56598e-05 | 0 | 2.86228e-06 | 0.00266257 | 0.000714233 | 0 | 1.21747e-05 | 8.38769e-05 | 0.992518 | 0.000917033 | 0.00223435 | 0.000839587 | 744468 | 346586 |
| CCT | AGG | 2.55071e-05 | 0 | 3.36958e-05 | 0.000202495 | 0.000142943 | 0 | 6.31325e-06 | 5.21749e-05 | 0.998443 | 9.93627e-05 | 0.000832224 | 0.000162739 | 1574468 | 485957 |
| CGA | TCG | 0.000195341 | 5.71812e-06 | 0 | 0.000435586 | 0.00375577 | 2.59455e-07 | 0 | 1.3187e-05 | 0.992395 | 0.000567712 | 0.00203181 | 0.000600074 | 454122 | 197892 |
| CGC | GCG | 0.00115224 | 2.18514e-05 | 0 | 0.000475226 | 0.00154924 | 3.06174e-06 | 0 | 3.83767e-06 | 0.993122 | 0.000613311 | 0.00241085 | 0.000648769 | 637525 | 303682 |
| CGG | CCG | 8.38769e-05 | 1.21747e-05 | 0 | 0.000714233 | 0.00266257 | 2.86228e-06 | 0 | 1.56598e-05 | 0.992518 | 0.000917033 | 0.00223435 | 0.000839587 | 744468 | 346586 |
| CGT | ACG | 0.000346364 | 6.34479e-07 | 0 | 0.000762827 | 0.00389774 | 1.55932e-06 | 0 | 2.45711e-05 | 0.989398 | 0.00101985 | 0.00328215 | 0.00126611 | 431886 | 201421 |
| CTA | TAG | 2.59023e-05 | 6.5708e-05 | 4.51903e-06 | 0 | 2.94485e-06 | 0.000313023 | 8.49863e-06 | 0 | 0.997775 | 5.14759e-05 | 0.00143941 | 0.000313309 | 569347 | 99230 |
| CTC | GAG | 1.28475e-05 | 8.85313e-05 | 1.52268e-05 | 0 | 4.00396e-06 | 9.58208e-05 | 2.69604e-06 | 0 | 0.998531 | 2.0635e-05 | 0.00101713 | 0.000212158 | 1474485 | 266418 |
| CTG | CAG | 3.86725e-06 | 5.07267e-05 | 8.20171e-06 | 0 | 7.14289e-06 | 6.26236e-05 | 7.3463e-06 | 0 | 0.998437 | 0.000158838 | 0.000895537 | 0.000368789 | 2038444 | 389937 |
| CTT | AAG | 1.21791e-05 | 6.57301e-05 | 6.01832e-06 | 0 | 3.3597e-06 | 6.25532e-05 | 1.68834e-06 | 0 | 0.998859 | 6.71025e-05 | 0.000725302 | 0.000197058 | 1421706 | 231976 |
| GAA | TTC | 0 | 2.33819e-06 | 6.71853e-05 | 2.28124e-06 | 0 | 1.0995e-05 | 3.55694e-05 | 2.49718e-06 | 0.999127 | 3.96726e-05 | 0.000564352 | 0.000148119 | 1426653 | 182607 |
| GAC | GTC | 0 | 5.76931e-06 | 0.000129205 | 5.62882e-07 | 0 | 2.60933e-05 | 4.08213e-05 | 6.50925e-07 | 0.998636 | 3.94994e-05 | 0.000847365 | 0.000274426 | 936499 | 126786 |
| GAG | CTC | 0 | 2.69604e-06 | 9.58208e-05 | 4.00396e-06 | 0 | 1.52268e-05 | 8.85313e-05 | 1.28475e-05 | 0.998531 | 2.0635e-05 | 0.00101713 | 0.000212158 | 1474485 | 266418 |
| GAT | ATC | 0 | 2.32287e-06 | 0.000282782 | 2.37742e-06 | 0 | 3.50039e-05 | 7.73986e-05 | 4.05687e-06 | 0.99841 | 5.76569e-05 | 0.000937637 | 0.00019067 | 996733 | 123596 |
| GCA | TGC | 2.41539e-05 | 0 | 1.71101e-06 | 0.000165667 | 0.000350726 | 0 | 3.14864e-06 | 0.000205153 | 0.998275 | 6.98427e-05 | 0.000759716 | 0.000144963 | 1375358 | 499866 |
| GCC | GGC | 9.72594e-06 | 0 | 2.3533e-05 | 0.000207441 | 0.000383262 | 0 | 8.25506e-06 | 5.88275e-05 | 0.998329 | 9.43116e-05 | 0.000757963 | 0.000128076 | 1498231 | 536641 |
| GCG | CGC | 3.83767e-06 | 0 | 3.06174e-06 | 0.00154924 | 0.000475226 | 0 | 2.18514e-05 | 0.00115224 | 0.993122 | 0.000613311 | 0.00241085 | 0.000648769 | 637525 | 303682 |
| GCT | AGC | 3.52966e-06 | 0 | 1.43751e-05 | 0.000304405 | 0.000304301 | 0 | 7.36537e-06 | 0.000159715 | 0.997961 | 4.63293e-05 | 0.00105065 | 0.000148172 | 1444949 | 489220 |
| GGA | TCC | 3.40376e-05 | 4.04183e-06 | 0 | 0.000239142 | 9.17325e-05 | 1.24871e-05 | 0 | 1.50784e-05 | 0.998768 | 6.93627e-05 | 0.000658728 | 0.000107836 | 1488940 | 412399 |
| GGC | GCC | 5.88275e-05 | 8.25506e-06 | 0 | 0.000383262 | 0.000207441 | 2.3533e-05 | 0 | 9.72594e-06 | 0.998329 | 9.43116e-05 | 0.000757963 | 0.000128076 | 1498231 | 536641 |
| GGG | CCC | 2.23314e-05 | 3.82002e-06 | 0 | 0.000184669 | 0.000178931 | 2.50168e-05 | 0 | 1.93533e-05 | 0.998344 | 9.46511e-05 | 0.000960994 | 0.000165817 | 1394016 | 460497 |
| GGT | ACC | 2.47564e-05 | 8.99116e-06 | 0 | 0.000316116 | 0.000170479 | 4.90779e-05 | 0 | 1.72045e-05 | 0.998043 | 0.000100953 | 0.00109122 | 0.000178641 | 1018286 | 329836 |
| GTA | TAC | 2.0261e-05 | 2.1884e-05 | 4.91525e-05 | 0 | 7.72323e-06 | 9.2301e-05 | 2.84149e-05 | 0 | 0.998231 | 6.45391e-05 | 0.00124419 | 0.000240815 | 620164 | 88677 |
| GTC | GAC | 6.50925e-07 | 4.08213e-05 | 2.60933e-05 | 0 | 5.62882e-07 | 0.000129205 | 5.76931e-06 | 0 | 0.998636 | 3.94994e-05 | 0.000847365 | 0.000274426 | 936499 | 126786 |
| GTG | CAC | 7.14591e-06 | 4.6735e-05 | 4.19027e-05 | 0 | 4.90439e-06 | 0.000120997 | 1.0632e-05 | 0 | 0.998009 | 0.000108281 | 0.00125141 | 0.000398743 | 1250785 | 165263 |
| GTT | AAC | 6.14302e-06 | 2.30908e-05 | 8.04239e-06 | 0 | 8.67532e-06 | 0.000129198 | 7.28518e-06 | 0 | 0.998466 | 6.71084e-05 | 0.00100601 | 0.000278577 | 877209 | 105535 |
| TAA | TTA | 0 | 1.96579e-05 | 8.19171e-05 | 1.15076e-05 | 0 | 1.82674e-05 | 3.30176e-05 | 1.33789e-05 | 0.998547 | 6.86705e-05 | 0.00100848 | 0.000197843 | 667594 | 97532 |
| TAC | GTA | 0 | 2.84149e-05 | 9.2301e-05 | 7.72323e-06 | 0 | 4.91525e-05 | 2.1884e-05 | 2.0261e-05 | 0.998231 | 6.45391e-05 | 0.00124419 | 0.000240815 | 620164 | 88677 |
| TAG | CTA | 0 | 8.49863e-06 | 0.000313023 | 2.94485e-06 | 0 | 4.51903e-06 | 6.5708e-05 | 2.59023e-05 | 0.997775 | 5.14759e-05 | 0.00143941 | 0.000313309 | 569347 | 99230 |
| TAT | ATA | 0 | 1.68731e-05 | 0.000302923 | 1.31074e-05 | 0 | 0.000132283 | 6.93765e-05 | 6.07224e-05 | 0.996971 | 7.64939e-05 | 0.00200803 | 0.000348852 | 696757 | 95346 |
| TCA | TGA | 2.26466e-05 | 0 | 4.187e-06 | 0.000102551 | 0.000308789 | 0 | 6.39505e-06 | 4.06782e-05 | 0.998781 | 6.18891e-05 | 0.000561064 | 0.000111167 | 1370077 | 403874 |
| TCC | GGA | 1.50784e-05 | 0 | 1.24871e-05 | 9.17325e-05 | 0.000239142 | 0 | 4.04183e-06 | 3.40376e-05 | 0.998768 | 6.93627e-05 | 0.000658728 | 0.000107836 | 1488940 | 412399 |
| TCG | CGA | 1.3187e-05 | 0 | 2.59455e-07 | 0.00375577 | 0.000435586 | 0 | 5.71812e-06 | 0.000195341 | 0.992395 | 0.000567712 | 0.00203181 | 0.000600074 | 454122 | 197892 |
| TCT | AGA | 1.14753e-05 | 0 | 1.05938e-05 | 0.000224857 | 0.000161721 | 0 | 5.77632e-06 | 0.000111305 | 0.99849 | 6.61268e-05 | 0.000780715 | 0.000137455 | 1474050 | 401802 |
| TGA | TCA | 4.06782e-05 | 6.39505e-06 | 0 | 0.000308789 | 0.000102551 | 4.187e-06 | 0 | 2.26466e-05 | 0.998781 | 6.18891e-05 | 0.000561064 | 0.000111167 | 1370077 | 403874 |
| TGC | GCA | 0.000205153 | 3.14864e-06 | 0 | 0.000350726 | 0.000165667 | 1.71101e-06 | 0 | 2.41539e-05 | 0.998275 | 6.98427e-05 | 0.000759716 | 0.000144963 | 1375358 | 499866 |
| TGG | CCA | 1.71917e-05 | 5.46305e-07 | 0 | 0.000206953 | 0.0001317 | 3.98925e-06 | 0 | 3.60134e-05 | 0.998729 | 4.12457e-05 | 0.000712533 | 0.000121082 | 1741161 | 563714 |
| TGT | ACA | 7.8699e-05 | 4.06178e-06 | 0 | 0.000609528 | 0.000252087 | 1.19252e-05 | 0 | 6.60276e-05 | 0.997411 | 6.95177e-05 | 0.00126541 | 0.000232174 | 1225029 | 423149 |
| TTA | TAA | 1.33789e-05 | 3.30176e-05 | 1.82674e-05 | 0 | 1.15076e-05 | 8.19171e-05 | 1.96579e-05 | 0 | 0.998547 | 6.86705e-05 | 0.00100848 | 0.000197843 | 667594 | 97532 |
| TTC | GAA | 2.49718e-06 | 3.55694e-05 | 1.0995e-05 | 0 | 2.28124e-06 | 6.71853e-05 | 2.33819e-06 | 0 | 0.999127 | 3.96726e-05 | 0.000564352 | 0.000148119 | 1426653 | 182607 |
| TTG | CAA | 6.89905e-06 | 2.29466e-05 | 1.27035e-05 | 0 | 4.46651e-06 | 6.26436e-05 | 4.32085e-06 | 0 | 0.998808 | 0.000133275 | 0.000660825 | 0.000283799 | 1194978 | 165091 |
| TTT | AAA | 8.50822e-06 | 2.60065e-05 | 6.44991e-06 | 0 | 8.17421e-06 | 5.96932e-05 | 8.66278e-06 | 0 | 0.999141 | 4.70585e-05 | 0.000562752 | 0.000131819 | 1449780 | 179857 |
66 rows