cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample 1029_11H-T1-TDNA-1_B23KFCWLT4_1 --normal_sample 1029_11H-N1-BDNA-1_B23KGCJLT4_1 --max_event_count 5 -v 1029_11H.tnseq.vcf.gz --contamination 1029_11H.tnseq.contamination_data.tsv --tumor_segments 1029_11H.tnseq.segments --orientation_priors 1029_11H.tnseq.orientation_data.tsv 1029_11H.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:17000001, elapsed 0.1s, est remaining 1.3s, peak mem 496MB, user 0.4s, sys 2.0s, output queue size 146
progress 10% @chr2:97000001, elapsed 0.1s, est remaining 0.9s, peak mem 496MB, user 1.4s, sys 6.3s, output queue size 202
progress 15% @chr3:10000001, elapsed 0.1s, est remaining 0.7s, peak mem 496MB, user 2.2s, sys 11.6s, output queue size 364
progress 20% @chr3:149000001, elapsed 0.2s, est remaining 0.6s, peak mem 496MB, user 3.0s, sys 16.8s, output queue size 526
progress 25% @chr4:187000001, elapsed 0.2s, est remaining 0.6s, peak mem 496MB, user 3.8s, sys 21.8s, output queue size 687
progress 30% @chr5:107000001, elapsed 0.2s, est remaining 0.5s, peak mem 496MB, user 4.5s, sys 26.4s, output queue size 152
progress 35% @chr6:140000001, elapsed 0.3s, est remaining 0.5s, peak mem 496MB, user 5.3s, sys 31.4s, output queue size 312
progress 40% @chr7:53000001, elapsed 0.3s, est remaining 0.4s, peak mem 496MB, user 6.2s, sys 36.2s, output queue size 474
progress 45% @chr8:92000001, elapsed 0.3s, est remaining 0.4s, peak mem 496MB, user 7.1s, sys 41.3s, output queue size 635
progress 50% @chr9:102000001, elapsed 0.3s, est remaining 0.3s, peak mem 496MB, user 8.0s, sys 46.1s, output queue size 797
progress 55% @chr10:24000001, elapsed 0.4s, est remaining 0.3s, peak mem 496MB, user 8.6s, sys 50.0s, output queue size 959
progress 60% @chr12:18000001, elapsed 0.4s, est remaining 0.3s, peak mem 496MB, user 9.3s, sys 55.0s, output queue size 1120
progress 65% @chr13:22000001, elapsed 0.4s, est remaining 0.2s, peak mem 496MB, user 10.2s, sys 60.0s, output queue size 1282
progress 70% @chr14:69000001, elapsed 0.5s, est remaining 0.2s, peak mem 496MB, user 11.0s, sys 65.2s, output queue size 1444
progress 75% @chr16:1, elapsed 0.5s, est remaining 0.2s, peak mem 496MB, user 11.8s, sys 70.3s, output queue size 1606
progress 80% @chr19:9000001, elapsed 0.5s, est remaining 0.1s, peak mem 496MB, user 12.5s, sys 75.4s, output queue size 1768
progress 85% @chr20:38000001, elapsed 0.6s, est remaining 0.1s, peak mem 496MB, user 13.4s, sys 80.4s, output queue size 1930
progress 90% @chr22:20000001, elapsed 0.6s, est remaining 0.1s, peak mem 496MB, user 14.1s, sys 85.6s, output queue size 2092
progress 95% @chrX:119000001, elapsed 0.6s, est remaining 0.0s, peak mem 496MB, user 14.7s, sys 90.4s, output queue size 2439
progress 100% @HLA-DQB1*02:01:01:1, elapsed 0.7s, est remaining 0.0s, peak mem 496MB, user 15.1s, sys 104.0s, output queue size 5677
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 2168680
output file size: 2021683
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 41547 calls 2.232 user 0.020 sys 4.561 real
"predict_filter": 13849 calls 1.254 user 0.369 sys 1.553 real
advance: 3219322 calls 0.920 user 41.679 sys 47.012 real
done: 1 calls 0.000 user 0.000 sys 0.008 real
execute: 1 calls 0.001 user 0.001 sys 0.860 real
fetch_ref: 21332 calls 0.221 user 0.387 sys 0.701 real
idle: 19111 calls 8.848 user 1.153 sys 488.217 real
init: 1 calls 0.406 user 0.130 sys 1.626 real
overall: 522473472 mem 33.209 user 108.115 sys 3.489 real