File Info

Filename
1029_0I_segments.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/dede3461197c22f8c454cd14d4f54f/1029_0I_segments.tsv
Size
41.0 KB
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL (1029_0I)
Attempt

Content

View in new tab
seg_id specimen_id chrom start end tumor_sample_id normal_sample_id n_probes n_het_sites cnlr_median cnlr_wmean mean_mbaf median_het_depth mean_valor mafR tcn lcn call clone_subset clone_purity purity clonal_frac n_clones dipLogR z_score residual_lr residual_lor sample_type
1 1029_0I chr1 69641 2028351 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 830 149 0.6707 0.6888 0.5532 1049.0 0.1706 0.0343 5 2 amp 1;2;5 0.3826 0.7352 0.5203 5 -0.518 45.1 0.0164 -0.0553 somatic
2 1029_0I chr1 2029084 2530177 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 180 32 -0.0026 0.0121 0.8338 409.5 1.6401 2.7439 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 21.31 -0.0026 -0.0219 somatic
3 1029_0I chr1 2555787 3769896 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 308 106 0.6306 0.6494 0.5212 924.0 0.1014 0.0139 4 2 amp 1;3;4 0.5666 0.7352 0.7706 5 -0.518 25.67 -0.017 0.0586 somatic
4 1029_0I chr1 3771342 56645514 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 13439 1702 0.7358 0.7483 0.5319 820.0 0.1485 0.0239 4 2 amp 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 197.82 0.0023 0.0999 somatic
5 1029_0I chr1 56674322 101996854 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 4835 566 0.6471 0.5496 0.5322 419.5 0.1699 0.0349 4 2 amp 1;3;4 0.5666 0.7352 0.7706 5 -0.518 104.35 -0.0005 0.09 somatic
6 1029_0I chr1 102878003 103664520 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 161 16 0.1355 0.0298 0.5524 419.0 0.161 0.0072 4 1 amp 5 0.0961 0.7352 0.1307 5 -0.518 4.31 0.0031 -0.0044 somatic
7 1029_0I chr1 103692405 120176396 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 3147 268 0.7253 0.6984 0.5272 634.5 0.1734 0.0323 6 3 amp 1;2;3 0.3258 0.7352 0.4432 5 -0.518 94.29 0.0014 0.0772 somatic
8 1029_0I chr1 120436508 162783339 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 6396 755 0.9911 1.0007 0.59 1080.0 0.345 0.1366 5 2 amp 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 184.95 -0.0046 0.0042 somatic
9 1029_0I chr1 162783459 185184384 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 3370 406 0.9762 0.9186 0.5952 700.0 0.3464 0.1379 5 2 amp 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 132.37 0.0063 0.0261 somatic
10 1029_0I chr1 185184728 200045603 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1129 75 0.536 0.5282 0.59 348.0 0.417 0.1808 6 2 amp 1 0.2139 0.7352 0.2909 5 -0.518 42.24 0.0222 0.0193 somatic
11 1029_0I chr1 200048171 248918363 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 8696 1338 0.9715 0.9539 0.5882 963.0 0.3261 0.121 5 2 amp 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 211.83 0.0016 0.0016 somatic
12 1029_0I chr10 47057 3782272 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 299 68 0.4793 0.5038 0.6451 534.8 0.5823 0.3798 4 1 amp 2;4 0.3858 0.7352 0.5248 5 -0.518 22.18 0.0085 -0.0089 somatic
13 1029_0I chr10 3784918 15168669 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1123 194 0.1115 0.1191 0.8206 343.0 1.4875 2.2641 2 0 cn-loh 1;4;5 0.6233 0.7352 0.8478 5 -0.518 50.01 0.1115 0.0165 somatic
14 1029_0I chr10 15212921 97679916 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 9625 1213 -0.0071 -0.0406 0.8218 390.8 1.5201 2.3725 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 124.08 -0.0071 -0.0252 somatic
15 1029_0I chr10 97713881 112432353 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 2477 281 0.7297 0.7171 0.5263 785.0 0.1711 0.0341 4 2 amp 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 84.17 -0.0038 0.0768 somatic
16 1029_0I chr10 112432360 119061364 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 961 113 0.0382 -0.0068 0.8165 313.0 1.5237 2.5497 2 0 cn-loh 1;4;5 0.6233 0.7352 0.8478 5 -0.518 36.94 0.0382 -0.0131 somatic
17 1029_0I chr10 119065374 133626762 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 2287 393 0.7374 0.7698 0.5343 824.0 0.1096 0.018 4 2 amp 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 81.85 0.0039 0.1096 somatic
18 1029_0I chr11 193064 14490712 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 4067 912 0.9357 0.9393 0.5894 1313.0 0.2812 0.0997 5 2 amp 1;4;5 0.6233 0.7352 0.8478 5 -0.518 140.38 -0.0166 0.0145 somatic
19 1029_0I chr11 14493636 16234655 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 147 13 0.1487 0.2184 0.7608 300.0 1.1093 1.5195 3 0 amp 2;4 0.3858 0.7352 0.5248 5 -0.518 10.46 -0.1058 0.0516 somatic
20 1029_0I chr11 16234595 57426207 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 4184 570 0.7294 0.6967 0.5491 804.0 0.1432 0.0225 5 2 amp 1;2;3;5 0.422 0.7352 0.5739 5 -0.518 109.71 0.0219 -0.091 somatic
21 1029_0I chr11 57460806 102864283 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 9216 907 -0.0376 -0.0533 0.8257 469.5 1.5368 2.4213 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 109.8 -0.0376 0.0052 somatic
22 1029_0I chr11 102865769 107650985 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 463 43 -0.3887 -0.4511 0.8305 301.5 1.5066 2.3615 1 0 del 1;2;3;4;5 0.7352 0.7352 1.0 5 -0.518 31.02 0.2724 0.2143 somatic
23 1029_0I chr11 107654136 134387716 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 5066 586 0.0076 0.025 0.8262 416.0 1.5642 2.4938 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 88.08 0.0076 0.0064 somatic
24 1029_0I chr12 66830 3829060 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 844 99 1.0105 1.0424 0.5762 745.0 0.3589 0.1374 5 2 amp 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 68.32 0.0148 -0.0575 somatic
25 1029_0I chr12 3829871 11789398 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 2487 383 0.4098 0.3702 0.8475 586.5 1.7311 3.3866 3 0 amp 1;2;4 0.5997 0.7352 0.8157 5 -0.518 91.93 0.0314 -0.0216 somatic
26 1029_0I chr12 11789398 11789878 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 4 2 0.4166 0.6083 0.8561 14585.5 1.8743 3.5152 6 0 amp 2;5 0.1687 0.7352 0.2294 5 -0.518 1.93 -0.0028 0.0 somatic
27 1029_0I chr12 11789878 15895529 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1246 74 0.457 0.4556 0.8709 392.0 1.8732 3.55 3 0 amp 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 53.63 0.0569 0.026 somatic
28 1029_0I chr12 15897849 22684615 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 869 121 -0.1269 -0.0957 0.8635 312.0 1.8361 3.4072 2 0 cn-loh 1;2;3;4;5 0.7352 0.7352 1.0 5 -0.518 48.17 -0.1269 -0.0806 somatic
29 1029_0I chr12 23534163 25205479 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 173 26 0.4938 0.3876 0.8628 326.2 1.8446 3.4453 3 0 amp 1;4;5 0.6233 0.7352 0.8478 5 -0.518 26.57 0.1024 0.0088 somatic
30 1029_0I chr12 25205959 25236167 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 79 18 0.3532 0.4309 0.8566 4924.0 1.7924 3.2172 3 0 amp 1;4;5 0.6233 0.7352 0.8478 5 -0.518 19.45 -0.0382 -0.0098 somatic
31 1029_0I chr12 25240025 26999712 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 245 31 0.3286 0.2084 0.8623 232.5 1.832 3.5488 3 0 amp 1;4;5 0.6233 0.7352 0.8478 5 -0.518 26.57 -0.0628 -0.0036 somatic
32 1029_0I chr12 27003206 31985135 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 600 117 0.9977 0.9045 0.6037 669.8 0.3635 0.1544 5 2 amp 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 57.5 0.002 0.0546 somatic
33 1029_0I chr12 31985365 39307755 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 261 23 0.4821 0.5044 0.7549 272.0 1.2356 1.9815 5 0 amp 1;2 0.2864 0.7352 0.3896 5 -0.518 21.87 -0.0336 -0.0244 somatic
34 1029_0I chr12 39307664 40412198 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 298 39 -0.2564 -0.2304 0.8701 197.0 1.8683 3.6539 2 0 cn-loh 1;2;3;4;5 0.7352 0.7352 1.0 5 -0.518 29.42 -0.2564 -0.0351 somatic
35 1029_0I chr12 40414428 49028180 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1693 183 0.3495 0.3009 0.8498 394.5 1.7125 3.3697 3 0 amp 1;2;4 0.5997 0.7352 0.8157 5 -0.518 64.14 -0.0289 -0.011 somatic
36 1029_0I chr12 49028074 49033955 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 114 6 -0.0123 0.0436 0.8698 17808.0 1.8781 3.5289 2 0 cn-loh 1;2;3;4;5 0.7352 0.7352 1.0 5 -0.518 11.1 -0.0123 0.0131 somatic
37 1029_0I chr12 49033880 49489612 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 556 23 0.0832 0.1256 0.8776 1808.0 1.9154 3.6778 2 0 cn-loh 1;2;3;4;5 0.7352 0.7352 1.0 5 -0.518 22.86 0.0832 0.071 somatic
38 1029_0I chr12 49490616 51890506 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 965 47 0.4656 0.4905 0.8788 442.0 1.9877 4.0037 3 0 amp 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 46.25 0.0527 0.0125 somatic
39 1029_0I chr12 51890576 52426886 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 266 52 0.4067 0.4402 0.8422 1061.0 1.7735 3.54 3 0 amp 1;2;4 0.5997 0.7352 0.8157 5 -0.518 32.36 0.0283 -0.0536 somatic
40 1029_0I chr12 52428234 52567200 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 89 64 0.4553 0.4045 0.8788 1307.7 1.9065 3.6574 3 0 amp 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 38.81 0.0424 0.0284 somatic
41 1029_0I chr12 52567601 71586359 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 4590 369 0.4077 0.3951 0.8685 631.0 1.895 3.643 3 0 amp 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 106.66 0.0076 0.0134 somatic
42 1029_0I chr12 71610983 76451010 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 389 25 0.0426 -0.0126 0.8673 152.0 1.7843 3.3356 2 0 cn-loh 1;2;3;4;5 0.7352 0.7352 1.0 5 -0.518 21.78 0.0426 -0.0675 somatic
43 1029_0I chr12 76487477 78185740 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 152 23 0.4255 0.4237 0.6929 341.8 1.1491 1.6878 6 0 amp 2;5 0.1687 0.7352 0.2294 5 -0.518 15.03 0.0061 -0.0257 somatic
44 1029_0I chr12 78188207 88532555 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 810 49 -0.2208 -0.2009 0.8714 211.5 2.0062 4.0976 2 0 cn-loh 1;2;3;4;5 0.7352 0.7352 1.0 5 -0.518 34.38 -0.2208 -0.0216 somatic
45 1029_0I chr12 88545715 101614569 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1496 137 0.4037 0.3357 0.861 287.0 1.775 3.2607 3 0 amp 1;4;5 0.6233 0.7352 0.8478 5 -0.518 61.53 0.0123 -0.0092 somatic
46 1029_0I chr12 101617142 108210359 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1100 170 0.0396 0.0099 0.8289 288.0 1.5648 2.5304 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 47.88 0.0396 0.0175 somatic
47 1029_0I chr12 108224682 119876180 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 2520 239 0.7665 0.7823 0.5219 643.0 0.1418 0.0292 6 3 amp 1;3;5 0.3494 0.7352 0.4752 5 -0.518 89.15 0.002 0.0562 somatic
48 1029_0I chr12 119989976 122483610 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1137 122 0.0068 0.013 0.8247 484.0 1.5429 2.4865 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 39.99 0.0068 -0.0011 somatic
49 1029_0I chr12 122490424 123724817 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 608 102 0.7621 0.7857 0.5665 508.0 0.2805 0.0905 5 2 amp 3;4;5 0.4488 0.7352 0.6104 5 -0.518 43.89 0.0195 -0.0377 somatic
50 1029_0I chr12 123726179 125654428 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 419 82 0.0378 0.0783 0.8294 504.0 1.5862 2.5777 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 33.56 0.0378 0.0325 somatic
51 1029_0I chr12 125654449 132859275 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 905 183 0.713 0.7122 0.5185 1242.0 0.0929 0.0092 4 2 amp 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 49.71 0.0001 0.0514 somatic
52 1029_0I chr12 132861435 133234376 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 107 11 0.0463 0.0663 0.8437 360.0 1.6272 2.6722 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 13.1 0.0463 0.0487 somatic
53 1029_0I chr13 19173833 20439754 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 196 40 1.0293 1.0398 0.5818 666.0 0.3491 0.1238 5 2 amp 1;2;4;5 0.6959 0.7352 0.9464 5 -0.518 33.68 -0.0019 -0.0446 somatic
54 1029_0I chr13 20489313 21177225 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 217 13 0.1507 0.1653 0.7187 720.0 1.0074 1.0248 3 0 amp 1;2;3 0.3258 0.7352 0.4432 5 -0.518 9.38 -0.067 0.0122 somatic
55 1029_0I chr13 21376542 110162468 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 6884 716 0.9455 0.8847 0.576 566.0 0.3386 0.125 5 2 amp 1;2;4 0.5997 0.7352 0.8157 5 -0.518 182.54 0.0198 -0.0455 somatic
56 1029_0I chr13 110163451 114326203 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 899 167 1.0316 1.0548 0.5784 788.5 0.2886 0.093 5 2 amp 1;2;4;5 0.6959 0.7352 0.9464 5 -0.518 72.19 0.0004 -0.056 somatic
57 1029_0I chr14 18601119 20345455 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 131 38 0.0618 0.0593 0.8076 649.5 1.4963 2.4716 2 0 cn-loh 1;2;4 0.5997 0.7352 0.8157 5 -0.518 20.77 0.0618 0.0177 somatic
58 1029_0I chr14 20345367 20356702 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 32 19 0.0802 0.1341 0.8215 2725.0 1.5825 2.5322 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 15.8 0.0802 -0.0021 somatic
59 1029_0I chr14 20357038 35401848 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 2564 299 -0.0045 -0.0024 0.8348 521.0 1.6272 2.6927 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 65.61 -0.0045 -0.0102 somatic
60 1029_0I chr14 35401848 35409869 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 51 19 -0.2233 -0.1488 0.8056 10611.0 1.3737 2.285 2 0 cn-loh 1;2;4 0.5997 0.7352 0.8157 5 -0.518 15.21 -0.2233 0.0285 somatic
61 1029_0I chr14 35534199 63991128 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 2803 221 0.0016 -0.0765 0.8212 250.0 1.5487 2.4696 2 0 cn-loh 1;4;5 0.6233 0.7352 0.8478 5 -0.518 52.45 0.0016 0.0132 somatic
62 1029_0I chr14 63993778 104173268 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 6182 734 0.0343 0.0385 0.827 372.5 1.5705 2.5098 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 98.98 0.0343 0.0098 somatic
63 1029_0I chr14 104173293 104770856 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 114 37 -0.1234 -0.1236 0.8222 457.0 1.487 2.2775 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 21.97 -0.1234 -0.0194 somatic
64 1029_0I chr14 104772149 104792663 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 44 17 -0.1257 -0.1282 0.8352 3434.5 1.6109 2.6146 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 16.0 -0.1257 0.0141 somatic
65 1029_0I chr14 104792565 105709503 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 503 94 -0.1684 -0.1429 0.7487 662.0 1.0955 1.7969 2 0 cn-loh 2;4;5 0.482 0.7352 0.6555 5 -0.518 26.12 -0.1684 0.0096 somatic
66 1029_0I chr14 105709478 105852033 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 164 67 -0.3695 -0.3557 0.7852 9505.5 1.4357 2.3075 1 0 del 1;2;4;5 0.6959 0.7352 0.9464 5 -0.518 27.51 0.2474 0.0978 somatic
67 1029_0I chr14 105855910 105916570 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 145 2 -0.1815 -0.1608 0.8133 747.0 1.4943 2.2078 0 0 del 2;3 0.1119 0.7352 0.1522 5 -0.518 5.06 -0.0102 0.0 somatic
68 1029_0I chr14 105916771 106874851 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 212 66 0.0561 0.0094 0.7848 2427.5 1.4037 2.2356 2 0 cn-loh 1;3;4 0.5666 0.7352 0.7706 5 -0.518 24.92 0.0561 -0.0073 somatic
69 1029_0I chr15 20535569 34104280 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1547 194 0.743 0.7404 0.5541 745.0 0.2043 0.0518 5 2 amp 2;3;4 0.4252 0.7352 0.5783 5 -0.518 67.98 0.0312 -0.0731 somatic
70 1029_0I chr15 34142257 34346294 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 91 16 0.0556 0.0973 0.8175 355.0 1.6925 2.9242 2 0 cn-loh 1;4;5 0.6233 0.7352 0.8478 5 -0.518 14.01 0.0556 -0.0037 somatic
71 1029_0I chr15 34346294 34347134 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 4 6 0.212 0.3103 0.8186 2304.8 1.3085 2.1525 3 0 amp 1;4 0.5272 0.7352 0.717 5 -0.518 8.79 -0.1255 0.0212 somatic
72 1029_0I chr15 34347854 34348814 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 14 0 -0.264 -0.2813 0 0 del 2;5 0.1687 0.7352 0.2294 5 -0.518 2.29 0.0025 0.0 somatic
73 1029_0I chr15 34348814 34350134 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 11 4 -0.168 -0.2217 0.8351 12309.5 1.62 2.6238 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 7.84 -0.168 0.0198 somatic
74 1029_0I chr15 34350134 41079923 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1095 108 -0.0073 0.0018 0.7718 527.0 1.2589 2.0766 2 0 cn-loh 1;4 0.5272 0.7352 0.717 5 -0.518 29.45 -0.0073 0.0113 somatic
75 1029_0I chr15 41080965 101819015 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 13315 1443 0.6878 0.6761 0.522 650.0 0.1049 0.0152 6 3 amp 1;5 0.31 0.7352 0.4217 5 -0.518 183.9 -0.0082 0.0568 somatic
76 1029_0I chr16 47432 90075935 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 17073 2463 0.7118 0.7214 0.5276 841.0 0.1236 0.0179 4 2 amp 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 215.65 -0.0011 0.083 somatic
77 1029_0I chr17 137555 18388294 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 6373 1007 -0.0097 0.008 0.827 562.5 1.5441 2.4547 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 116.3 -0.0097 0.0175 somatic
78 1029_0I chr17 18491903 21415833 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 529 155 0.7531 0.7765 0.5733 896.0 0.2073 0.0507 5 2 amp 3;4;5 0.4488 0.7352 0.6104 5 -0.518 40.91 0.0105 -0.0012 somatic
79 1029_0I chr17 21415894 29761270 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 975 92 0.5131 0.5212 0.5898 718.2 0.2795 0.0996 6 2 amp 1 0.2139 0.7352 0.2909 5 -0.518 37.89 -0.0007 0.0315 somatic
80 1029_0I chr17 29793836 51931178 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 8597 751 -0.0035 0.0176 0.8232 547.0 1.531 2.4625 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 98.67 -0.0035 -0.0093 somatic
81 1029_0I chr17 52072265 83094575 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 7646 1036 0.7217 0.7316 0.5252 829.0 0.1292 0.0195 6 3 amp 1;2;3 0.3258 0.7352 0.4432 5 -0.518 146.28 -0.0022 0.0732 somatic
82 1029_0I chr18 47389 80247372 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 7001 973 0.7552 0.6975 0.5299 563.0 0.1586 0.0297 4 2 amp 1;2;4;5 0.6959 0.7352 0.9464 5 -0.518 146.5 -0.0068 0.0861 somatic
83 1029_0I chr19 110681 29207676 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 11333 1822 0.2599 0.2652 0.5375 602.0 0.1612 0.0307 5 2 amp 3;5 0.1355 0.7352 0.1843 5 -0.518 65.21 -0.0071 0.005 somatic
84 1029_0I chr19 29207746 54242117 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 9646 1122 0.6993 0.697 0.6073 862.0 0.4228 0.198 6 2 amp 4 0.3133 0.7352 0.4261 5 -0.518 162.42 -0.0025 0.0187 somatic
85 1029_0I chr19 54250782 58571441 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 2042 396 -0.2766 -0.2588 0.7702 443.0 1.2661 1.7612 2 0 cn-loh 1;4 0.5272 0.7352 0.717 5 -0.518 62.87 -0.2766 -0.001 somatic
86 1029_0I chr2 41522 90221450 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 12122 1391 0.7579 0.7439 0.5294 659.0 0.1592 0.0293 4 2 amp 1;2;4;5 0.6959 0.7352 0.9464 5 -0.518 193.43 -0.0041 0.0867 somatic
87 1029_0I chr2 94871525 113197972 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 3674 419 0.4246 0.4206 0.6345 643.0 0.3996 0.2003 6 1 amp 2;5 0.1687 0.7352 0.2294 5 -0.518 64.83 0.0052 0.0045 somatic
88 1029_0I chr2 113198713 113239747 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 191 48 0.1225 0.1664 0.6346 16815.5 0.5371 0.2908 3 0 amp 2;3;5 0.2081 0.7352 0.283 5 -0.518 9.87 -0.0203 -0.0353 somatic
89 1029_0I chr2 113239747 115836783 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 172 21 -0.0498 -0.0426 0.6271 273.0 0.4771 0.2602 2 0 cn-loh 1 0.2139 0.7352 0.2909 5 -0.518 5.39 -0.0498 0.037 somatic
90 1029_0I chr2 115840696 135876418 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1881 210 0.4027 0.39 0.6386 611.0 0.4837 0.2652 6 1 amp 2;5 0.1687 0.7352 0.2294 5 -0.518 44.54 -0.0167 0.0214 somatic
91 1029_0I chr2 135907299 140231895 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 194 18 0.1794 0.122 0.6288 605.0 0.5657 0.3291 4 0 amp 3;5 0.1355 0.7352 0.1843 5 -0.518 7.66 -0.004 0.0079 somatic
92 1029_0I chr2 140231895 140776288 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 235 50 -0.4378 -0.3614 0.6336 933.5 0.5432 0.3077 1 0 del 2;3;4 0.4252 0.7352 0.5783 5 -0.518 17.88 -0.0929 -0.0322 somatic
93 1029_0I chr2 140813612 147896362 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 310 32 0.2796 0.2311 0.6215 409.0 0.561 0.3394 6 0 amp 5 0.0961 0.7352 0.1307 5 -0.518 12.97 0.0259 -0.0371 somatic
94 1029_0I chr2 147896300 148463919 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 48 8 -0.7487 -0.5903 0.5649 121.0 0.3292 0.2302 0 0 del 4;5 0.4094 0.7352 0.5568 5 -0.518 12.08 0.0111 0.1885 somatic
95 1029_0I chr2 148468285 161204837 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1457 139 0.458 0.406 0.6226 401.0 0.5086 0.2849 4 1 amp 1;2;3 0.3258 0.7352 0.4432 5 -0.518 42.53 0.0511 -0.041 somatic
96 1029_0I chr2 161223863 167218316 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 842 74 0.0815 0.0591 0.6348 282.0 0.5766 0.3606 3 0 amp 2;5 0.1687 0.7352 0.2294 5 -0.518 11.76 -0.0353 0.03 somatic
97 1029_0I chr2 167239804 178631293 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 2264 235 0.4655 0.3837 0.6232 534.0 0.5351 0.3037 3 1 amp 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 54.11 0.0526 -0.0398 somatic
98 1029_0I chr2 178632146 178689943 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 174 4 -0.1276 -0.295 0.6147 355.0 0.3713 0.1114 2 0 cn-loh 2;3;5 0.2081 0.7352 0.283 5 -0.518 4.4 -0.1276 0.0025 somatic
99 1029_0I chr2 178691985 197402826 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 2295 228 0.2756 0.2142 0.6217 321.5 0.5061 0.2835 6 0 amp 5 0.0961 0.7352 0.1307 5 -0.518 34.68 0.0219 -0.0413 somatic
100 1029_0I chr2 197402749 241873273 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 7841 1014 0.4046 0.391 0.626 604.2 0.5276 0.2965 4 1 amp 4 0.3133 0.7352 0.4261 5 -0.518 90.77 0.0114 -0.0038 somatic
101 1029_0I chr20 87677 64273595 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 10247 1522 0.7305 0.7483 0.5256 752.0 0.1511 0.0242 4 2 amp 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 171.41 -0.003 0.0734 somatic
102 1029_0I chr21 5117108 10603697 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 123 18 0.1221 0.2203 0.6764 1064.0 0.567 0.3249 3 0 amp 1;3 0.2533 0.7352 0.3445 5 -0.518 7.89 -0.0499 0.0109 somatic
103 1029_0I chr21 10605401 29072000 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 616 86 -0.1271 -0.2148 0.8166 266.0 1.5636 2.5096 2 0 cn-loh 1;4;5 0.6233 0.7352 0.8478 5 -0.518 32.89 -0.1271 -0.0162 somatic
104 1029_0I chr21 29071940 41496172 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 2063 292 0.0753 0.0838 0.832 366.2 1.588 2.5839 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 64.23 0.0753 -0.0371 somatic
105 1029_0I chr21 41496172 41530276 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 121 23 -0.3049 -0.2339 0.84 9898.5 1.5984 2.5523 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 20.48 -0.3049 0.055 somatic
106 1029_0I chr21 41530931 46004008 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1293 296 -0.0099 0.0196 0.821 517.5 1.4972 2.357 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 61.29 -0.0099 -0.0253 somatic
107 1029_0I chr21 46111426 46664423 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 386 144 0.906 0.9615 0.5678 999.0 0.2721 0.0833 5 2 amp 1;3;4 0.5666 0.7352 0.7706 5 -0.518 41.84 0.0186 -0.0611 somatic
108 1029_0I chr22 15528158 50782316 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 9370 1417 0.6969 0.7182 0.5259 945.0 0.1054 0.0134 6 3 amp 1;5 0.31 0.7352 0.4217 5 -0.518 156.41 0.0009 0.0777 somatic
109 1029_0I chr3 319726 2866958 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 102 14 0.3008 0.1957 0.5437 319.3 0.2743 0.0624 5 2 amp 2;5 0.1687 0.7352 0.2294 5 -0.518 7.13 -0.0246 -0.0042 somatic
110 1029_0I chr3 2883119 72998199 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 12704 1293 0.7347 0.7402 0.5275 737.0 0.1411 0.023 4 2 amp 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 191.93 0.0012 0.0807 somatic
111 1029_0I chr3 73047171 109149939 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1906 250 0.5795 0.4966 0.5714 521.0 0.1508 0.029 5 2 amp 1;2;3 0.3258 0.7352 0.4432 5 -0.518 59.37 0.0054 0.0329 somatic
112 1029_0I chr3 109300323 156706807 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 6975 824 0.7197 0.6657 0.5275 601.0 0.1775 0.0371 6 3 amp 1;2;3 0.3258 0.7352 0.4432 5 -0.518 139.32 -0.0042 0.0776 somatic
113 1029_0I chr3 156829290 164987272 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 483 76 0.6277 0.5147 0.5326 514.0 0.2135 0.0405 4 2 amp 1;4 0.5272 0.7352 0.717 5 -0.518 32.01 0.0168 0.0954 somatic
114 1029_0I chr3 164991311 167792797 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 235 19 0.0153 0.001 0.556 160.0 0.2213 0.0568 2 0 cn-loh 2 0.0725 0.7352 0.0987 5 -0.518 1.77 0.0153 0.0165 somatic
115 1029_0I chr3 167794620 172760299 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 605 60 0.7611 0.731 0.5282 490.5 0.2024 0.0517 4 2 amp 1;2;4;5 0.6959 0.7352 0.9464 5 -0.518 43.38 -0.0009 0.0769 somatic
116 1029_0I chr3 172761568 182918123 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 699 50 0.4546 0.4279 0.519 527.0 0.198 0.0415 4 2 amp 1;2;5 0.3826 0.7352 0.5203 5 -0.518 27.85 -0.0127 0.0413 somatic
117 1029_0I chr3 182938024 198169878 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 3228 405 0.7468 0.7623 0.5285 777.4 0.1117 0.0202 4 2 amp 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 98.36 0.0133 0.0855 somatic
118 1029_0I chr4 53399 41944950 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 4640 726 0.4103 0.4002 0.6219 525.0 0.5043 0.2763 4 1 amp 1;5 0.31 0.7352 0.4217 5 -0.518 71.29 0.0207 -0.0197 somatic
119 1029_0I chr4 41949256 148154960 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 9812 1111 0.3321 0.2383 0.6188 341.0 0.4998 0.276 6 1 amp 3;5 0.1355 0.7352 0.1843 5 -0.518 83.94 -0.0139 0.0081 somatic
120 1029_0I chr4 148194714 184010652 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 2519 282 -0.0728 -0.1847 0.825 243.2 1.5525 2.4728 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 60.87 -0.0728 -0.0139 somatic
121 1029_0I chr4 184010655 184474194 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 81 18 -0.0043 0.1109 0.8293 1287.0 1.5699 2.4689 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 15.83 -0.0043 -0.0368 somatic
122 1029_0I chr4 184474345 190174838 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 715 124 0.1143 0.1031 0.8189 383.2 1.4901 2.2938 2 0 cn-loh 1;4;5 0.6233 0.7352 0.8478 5 -0.518 39.77 0.1143 0.0073 somatic
123 1029_0I chr5 113220 223584 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 74 24 -0.0459 0.0678 0.8339 398.0 1.6333 2.6926 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 18.48 -0.0459 -0.0217 somatic
124 1029_0I chr5 224330 353939 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 72 73 0.1552 0.3514 0.8501 2670.0 1.6091 2.6006 2 0 cn-loh 1;2;4;5 0.6959 0.7352 0.9464 5 -0.518 35.31 0.1552 0.0015 somatic
125 1029_0I chr5 376602 1295696 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 361 64 -0.078 -0.0683 0.8317 428.5 1.5657 2.5136 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 30.05 -0.078 -0.0361 somatic
126 1029_0I chr5 1295696 81394163 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 7184 946 0.3849 0.3098 0.6291 419.5 0.5283 0.3067 3 1 amp 1;4;5 0.6233 0.7352 0.8478 5 -0.518 83.71 -0.0065 0.0049 somatic
127 1029_0I chr5 81420443 131744719 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 3576 462 0.2651 0.1592 0.6334 351.5 0.5368 0.3103 6 0 amp 5 0.0961 0.7352 0.1307 5 -0.518 44.96 0.0114 0.0107 somatic
128 1029_0I chr5 131796815 181260807 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 8658 924 0.3883 0.3856 0.6398 622.0 0.5684 0.3422 6 1 amp 2;5 0.1687 0.7352 0.2294 5 -0.518 92.53 -0.0311 0.0269 somatic
129 1029_0I chr6 304553 411129 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 91 23 0.4332 0.4596 0.6407 2621.5 0.5182 0.2752 3 1 amp 1;2;3;4;5 0.7352 0.7352 1.0 5 -0.518 11.55 -0.0185 0.0117 somatic
130 1029_0I chr6 411129 29676995 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 3292 448 0.4969 0.4998 0.6327 569.0 0.5307 0.3023 3 1 amp 1;2;3;4;5 0.7352 0.7352 1.0 5 -0.518 70.92 0.0452 -0.0408 somatic
131 1029_0I chr6 29722888 29950768 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 152 192 0.1151 0.309 0.5975 9027.0 0.5407 0.2971 3 0 amp 3;5 0.1355 0.7352 0.1843 5 -0.518 13.24 0.0205 0.0012 somatic
132 1029_0I chr6 30061482 32215321 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1901 347 0.3944 0.4053 0.608 1158.0 0.5326 0.2946 3 1 amp 1;3;4 0.5666 0.7352 0.7706 5 -0.518 43.93 0.0346 -0.0334 somatic
133 1029_0I chr6 32215295 33089738 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 539 555 0.3949 0.4503 0.5723 8106.5 0.5375 0.2949 6 2 amp 2;5 0.1687 0.7352 0.2294 5 -0.518 26.54 -0.0245 0.0288 somatic
134 1029_0I chr6 33163609 47478278 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 3975 493 0.4344 0.4368 0.6389 689.0 0.5658 0.3397 4 1 amp 3;4 0.3527 0.7352 0.4797 5 -0.518 69.63 -0.0014 0.0064 somatic
135 1029_0I chr6 47503271 148468595 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 10556 1105 0.3154 0.2257 0.6142 381.5 0.4738 0.2443 4 1 amp 1;3 0.2533 0.7352 0.3445 5 -0.518 82.3 -0.0103 0.0143 somatic
136 1029_0I chr6 148468535 152145625 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 822 130 0.4123 0.4286 0.6037 960.0 0.4566 0.2179 3 1 amp 1;3;4 0.5666 0.7352 0.7706 5 -0.518 29.43 0.0525 -0.0537 somatic
137 1029_0I chr6 152147999 170584636 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 2595 370 0.4225 0.4134 0.6161 539.0 0.4634 0.2425 3 1 amp 1;2;4 0.5997 0.7352 0.8157 5 -0.518 53.79 0.0441 -0.0312 somatic
138 1029_0I chr7 193154 77773250 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 8610 1246 0.7678 0.7396 0.5258 768.0 0.0973 0.0134 6 3 amp 3;4 0.3527 0.7352 0.4797 5 -0.518 165.14 -0.0023 0.0745 somatic
139 1029_0I chr7 77773198 87398678 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 885 96 0.4833 0.3908 0.5276 592.5 0.1547 0.033 4 2 amp 4;5 0.4094 0.7352 0.5568 5 -0.518 33.35 -0.0118 0.0777 somatic
140 1029_0I chr7 87402095 87566894 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 152 2 0.916 0.9769 0.527 1280.0 0.2578 0.0448 6 0 amp 3;4;5 0.4488 0.7352 0.6104 5 -0.518 26.16 -0.0082 0.0 somatic
141 1029_0I chr7 87566857 95299123 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1136 121 0.5859 0.5338 0.5306 474.0 0.122 0.0172 6 3 amp 1;3 0.2533 0.7352 0.3445 5 -0.518 45.8 -0.0054 0.0859 somatic
142 1029_0I chr7 95302178 100320009 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1068 81 0.0637 0.0739 0.8294 355.0 1.6406 2.7238 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 33.51 0.0637 0.0257 somatic
143 1029_0I chr7 100358278 100676352 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 239 6 0.6968 0.7223 0.8928 1217.5 2.0764 4.3047 4 0 amp 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 27.82 -0.0161 0.0069 somatic
144 1029_0I chr7 100676485 102248763 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 749 180 -0.0462 -0.0393 0.7644 740.0 1.0268 1.9467 2 0 cn-loh 2;3;4;5 0.5214 0.7352 0.7091 5 -0.518 36.97 -0.0462 -0.0088 somatic
145 1029_0I chr7 102248763 102249243 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 6 3 -0.2155 -0.185 0.8498 5836.0 1.6521 2.5899 2 0 cn-loh 1;2;4;5 0.6959 0.7352 0.9464 5 -0.518 7.25 -0.2155 0.0042 somatic
146 1029_0I chr7 102249243 102254643 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 45 0 -0.2217 -0.0858 1 0 del 1;2 0.2864 0.7352 0.3896 5 -0.518 3.44 0.0013 0.0 somatic
147 1029_0I chr7 102254643 102255003 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 3 2 0.0194 0.0847 0.8459 11844.0 1.5175 3 0 amp 3 0.0394 0.7352 0.0536 5 -0.518 0.08 -0.0087 0.0 somatic
148 1029_0I chr7 102255003 102478897 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 129 25 -0.0013 0.017 0.8413 607.0 1.6093 2.6124 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 19.58 -0.0013 0.0403 somatic
149 1029_0I chr7 102483796 103316148 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 162 11 0.1642 0.0633 0.7432 192.0 1.2506 2.0233 3 0 amp 3;4 0.3527 0.7352 0.4797 5 -0.518 9.33 -0.0701 0.0364 somatic
150 1029_0I chr7 103316828 117323007 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1684 120 0.7713 0.7278 0.5319 543.2 0.1676 0.0361 6 3 amp 3;4 0.3527 0.7352 0.4797 5 -0.518 73.35 0.0012 0.0935 somatic
151 1029_0I chr7 117363584 127583363 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 841 110 0.5077 0.3859 0.5367 549.0 0.1639 0.0341 5 2 amp 1;3 0.2533 0.7352 0.3445 5 -0.518 34.22 0.0431 -0.0711 somatic
152 1029_0I chr7 127584153 159144810 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 5780 640 0.7684 0.757 0.5377 887.0 0.1551 0.0298 6 3 amp 3;4 0.3527 0.7352 0.4797 5 -0.518 135.52 -0.0017 0.1243 somatic
153 1029_0I chr8 166190 11750294 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 906 227 -0.0176 -0.0311 0.7999 444.0 1.4039 2.2569 2 0 cn-loh 1;2;4 0.5997 0.7352 0.8157 5 -0.518 48.62 -0.0176 -0.0376 somatic
154 1029_0I chr8 11754931 11762097 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 28 18 -0.2875 -0.14 0.8335 1958.5 1.6247 2.6347 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 16.55 -0.2875 -0.0026 somatic
155 1029_0I chr8 11771405 13133033 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 150 53 0.0846 -0.0151 0.8235 486.5 1.5241 2.3678 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 26.32 0.0846 -0.0093 somatic
156 1029_0I chr8 13276205 17286477 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 165 23 -0.3993 -0.4522 0.8143 190.0 1.5893 2.6103 1 0 del 1;2;3;4;5 0.7352 0.7352 1.0 5 -0.518 20.17 0.2618 0.0914 somatic
157 1029_0I chr8 17299803 23680468 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1101 233 0.0042 0.0126 0.8359 426.5 1.6538 2.7738 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 58.08 0.0042 -0.0058 somatic
158 1029_0I chr8 23680468 23845094 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 31 8 -0.1313 -0.0634 0.8258 2591.0 1.5391 2.3694 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 10.57 -0.1313 0.0271 somatic
159 1029_0I chr8 23851298 31085296 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1129 140 0.0263 0.0148 0.8268 287.0 1.5107 2.3445 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 42.99 0.0263 0.0026 somatic
160 1029_0I chr8 31087726 31116442 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 27 1 -0.8885 -0.9018 0.8963 540.0 2.3383 0 0 del 3;4;5 0.4488 0.7352 0.6104 5 -0.518 10.69 -0.0291 0.0 somatic
161 1029_0I chr8 31116339 32548878 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 108 28 -0.2338 -0.2475 0.8271 1478.0 1.5732 2.492 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 20.36 -0.2338 0.0311 somatic
162 1029_0I chr8 32554941 32635075 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 151 5 0.0053 0.0207 0.7531 4847.0 1.1582 1.7727 2 0 cn-loh 2;3;4;5 0.5214 0.7352 0.7091 5 -0.518 5.91 0.0053 -0.0526 somatic
163 1029_0I chr8 32635075 32635435 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 3 2 -0.4488 -0.472 0.8066 4091.0 1.4426 2.0845 1 0 del 1;4 0.5272 0.7352 0.717 5 -0.518 1.8 -0.0074 0.0 somatic
164 1029_0I chr8 32635435 32658475 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 160 0 -0.3402 -0.2574 1 0 del 1;2;3;5 0.422 0.7352 0.5739 5 -0.518 9.97 0.0017 0.0 somatic
165 1029_0I chr8 32658595 32725075 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 392 35 -0.0818 0.0442 0.8129 6783.0 1.5012 2.2619 2 0 cn-loh 1;4;5 0.6233 0.7352 0.8478 5 -0.518 21.0 -0.0818 -0.0015 somatic
166 1029_0I chr8 32725075 38426430 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1073 58 -0.0358 0.005 0.8279 875.0 1.5612 2.4643 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 28.28 -0.0358 0.0305 somatic
167 1029_0I chr8 38426430 38467710 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 264 25 -0.2791 -0.1416 0.8329 13596.5 1.5951 2.5469 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 21.84 -0.2791 0.0042 somatic
168 1029_0I chr8 38467710 39071410 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 111 23 0.0983 0.0091 0.8261 349.8 1.4702 2.2439 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 17.56 0.0983 0.0022 somatic
169 1029_0I chr8 39077213 39914015 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 141 10 -0.5762 -0.6526 0.8253 153.0 1.6376 2.758 1 0 del 1;2;3;4;5 0.7352 0.7352 1.0 5 -0.518 19.44 0.0849 0.1592 somatic
170 1029_0I chr8 39917832 49075306 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1205 52 0.102 0.1297 0.8284 594.0 1.5284 2.3816 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 27.85 0.102 0.0282 somatic
171 1029_0I chr8 50394178 56010719 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 456 49 0.0018 -0.0415 0.8303 439.0 1.5537 2.4463 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 25.97 0.0018 0.0363 somatic
172 1029_0I chr8 56010719 56166518 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 38 12 0.0682 0.0933 0.8337 4207.5 1.577 2.4924 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 13.3 0.0682 0.0045 somatic
173 1029_0I chr8 56166582 89931438 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 2365 274 -0.035 -0.1059 0.8196 279.0 1.5337 2.3914 2 0 cn-loh 1;4;5 0.6233 0.7352 0.8478 5 -0.518 58.22 -0.035 0.0051 somatic
174 1029_0I chr8 89931438 89995675 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 92 30 -0.1645 -0.0455 0.828 1696.0 1.5326 2.357 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 20.68 -0.1645 0.0388 somatic
175 1029_0I chr8 90001466 91960561 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 167 29 -0.2941 -0.4469 0.8336 133.0 1.6083 2.615 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 21.74 -0.2941 0.0288 somatic
176 1029_0I chr8 91970633 106658241 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1794 200 0.0225 -0.0523 0.8276 287.5 1.5603 2.473 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 51.56 0.0225 0.0083 somatic
177 1029_0I chr8 106679159 116771754 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 623 48 -0.5696 -0.5673 0.8213 154.0 1.4513 2.1631 1 0 del 1;2;3;4;5 0.7352 0.7352 1.0 5 -0.518 40.88 0.0915 0.1319 somatic
178 1029_0I chr8 116771714 116848806 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 20 5 0.1917 0.4124 0.837 1302.0 1.597 2.552 3 0 amp 1;3;4 0.5666 0.7352 0.7706 5 -0.518 8.86 -0.1681 0.0203 somatic
179 1029_0I chr8 116848846 116874814 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 55 15 -0.3104 -0.6474 0.8381 787.0 1.5396 2.4265 2 0 cn-loh 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 15.9 -0.3104 0.0205 somatic
180 1029_0I chr8 116879776 145054212 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 3908 600 -0.0596 -0.0659 0.8259 451.2 1.5481 2.5032 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 89.5 -0.0596 0.0059 somatic
181 1029_0I chr9 15056 68384558 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 5400 637 -0.0075 -0.0439 0.8174 472.0 1.4849 2.3293 2 0 cn-loh 1;4;5 0.6233 0.7352 0.8478 5 -0.518 88.34 -0.0075 0.0013 somatic
182 1029_0I chr9 68387411 77728711 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 1104 140 0.7113 0.6735 0.8884 485.0 2.081 4.3902 4 0 amp 1;4;5 0.6233 0.7352 0.8478 5 -0.518 79.56 0.0124 0.0076 somatic
183 1029_0I chr9 77794408 109943425 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 4605 472 0.0233 0.0103 0.8234 566.0 1.5699 2.4997 2 0 cn-loh 1;2;3;4 0.6391 0.7352 0.8693 5 -0.518 78.41 0.0233 -0.0074 somatic
184 1029_0I chr9 110015894 134033707 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 5461 670 0.7438 0.7617 0.5233 756.8 0.1297 0.0182 4 2 amp 1;3;4;5 0.6627 0.7352 0.9013 5 -0.518 127.38 0.0103 0.0643 somatic
185 1029_0I chr9 134034708 138231128 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 2152 291 0.6475 0.6465 0.5168 960.7 0.0708 0.0075 4 2 amp 1;3;4 0.5666 0.7352 0.7706 5 -0.518 69.59 -0.0001 0.0415 somatic
186 1029_0I chrX 2853959 24647121 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 2026 0 -0.175 -0.2031 3 0 amp 2;4 0.3858 0.7352 0.5248 5 -0.518 18.24 -0.4295 0.0 somatic
187 1029_0I chrX 24672555 37655871 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 654 3 -0.4352 -0.5781 0.525 301.0 0.6173 0.3393 6 0 high-amp 5 0.0961 0.7352 0.1307 5 -0.518 25.78 -0.6889 -0.4394 somatic
188 1029_0I chrX 37659462 155545278 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 12890 26 -0.2942 -0.3296 0.6374 1700.5 0.1393 0.0139 3 0 amp 4 0.3133 0.7352 0.4261 5 -0.518 77.65 -0.5041 -0.3176 somatic
189 1029_0I chrY 2786997 2979990 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 37 0 -2.2271 -2.2426 0 0 del 1;3;4 0.5666 0.7352 0.7706 5 -0.518 31.38 -1.0209 0.0 somatic
190 1029_0I chrY 6868036 20779689 1029_0I-T1-TDNA-1_A23KCGYLT4_1 1029_0I-N1-BDNA-1_B23KGCJLT4_1 279 0 -0.2761 -0.3709 3 0 amp 1;2;3 0.3258 0.7352 0.4432 5 -0.518 10.68 -0.4938 0.0 somatic
191 rows