[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_16G-T1-TDNA-1_B23KFCWLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_16G-T1-TDNA-1_B23KFCWLT4_1.recalibrated.bam.bai

Loaded 53092669 sites across 3366 contigs
Loaded 53092669 sites across 3366 contigs
Reads: 669999667 total, 2151673 skipped (flags/unmapped), 54159605 no site overlap
Fragments: 318608399 total (294370495 paired, 2838 singletons, 709495 discordant, 23525571 orphans)
Sites: 53092669 total, 10293174 with data, 4944108 output (depth>=10)
Reads: 713255515 total, 2080875 skipped (flags/unmapped), 62091472 no site overlap
Fragments: 336723576 total (311246197 paired, 3140 singletons, 1113395 discordant, 24360844 orphans)
Sites: 53092669 total, 9604881 with data, 4679142 output (depth>=10)