cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample 1029_0I-T1-TDNA-1_A23KCGYLT4_1 --normal_sample 1029_0I-N1-BDNA-1_B23KGCJLT4_1 --max_event_count 5 -v 1029_0I.tnseq.vcf.gz --contamination 1029_0I.tnseq.contamination_data.tsv --tumor_segments 1029_0I.tnseq.segments --orientation_priors 1029_0I.tnseq.orientation_data.tsv 1029_0I.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:72000001, elapsed 0.1s, est remaining 1.3s, peak mem 486MB, user 0.7s, sys 3.6s, output queue size 161
progress 10% @chr2:75000001, elapsed 0.1s, est remaining 1.0s, peak mem 486MB, user 1.6s, sys 9.7s, output queue size 170
progress 15% @chr3:27000001, elapsed 0.1s, est remaining 0.8s, peak mem 486MB, user 2.4s, sys 15.7s, output queue size 332
progress 20% @chr3:147000001, elapsed 0.2s, est remaining 0.7s, peak mem 486MB, user 3.4s, sys 21.6s, output queue size 494
progress 25% @chr4:59000001, elapsed 0.2s, est remaining 0.6s, peak mem 486MB, user 4.3s, sys 26.1s, output queue size 654
progress 30% @chr5:7000001, elapsed 0.2s, est remaining 0.6s, peak mem 486MB, user 5.2s, sys 27.4s, output queue size 120
progress 35% @chr7:17000001, elapsed 0.3s, est remaining 0.5s, peak mem 486MB, user 6.2s, sys 30.3s, output queue size 280
progress 40% @chr6:96000001, elapsed 0.3s, est remaining 0.5s, peak mem 486MB, user 7.5s, sys 33.0s, output queue size 442
progress 45% @chr8:38000001, elapsed 0.4s, est remaining 0.4s, peak mem 486MB, user 8.5s, sys 38.7s, output queue size 604
progress 50% @chr9:85000001, elapsed 0.4s, est remaining 0.4s, peak mem 486MB, user 9.5s, sys 44.4s, output queue size 765
progress 55% @chr10:98000001, elapsed 0.4s, est remaining 0.4s, peak mem 486MB, user 10.5s, sys 50.2s, output queue size 926
progress 60% @chr12:27000001, elapsed 0.5s, est remaining 0.3s, peak mem 486MB, user 11.4s, sys 56.2s, output queue size 1089
progress 65% @chr13:41000001, elapsed 0.5s, est remaining 0.3s, peak mem 486MB, user 12.3s, sys 62.3s, output queue size 1250
progress 70% @chr14:65000001, elapsed 0.5s, est remaining 0.2s, peak mem 486MB, user 13.2s, sys 68.3s, output queue size 1412
progress 75% @chr16:38000001, elapsed 0.6s, est remaining 0.2s, peak mem 486MB, user 14.2s, sys 74.2s, output queue size 1574
progress 80% @chr17:52000001, elapsed 0.6s, est remaining 0.2s, peak mem 486MB, user 15.3s, sys 80.2s, output queue size 1736
progress 85% @chr20:53000001, elapsed 0.7s, est remaining 0.1s, peak mem 486MB, user 16.4s, sys 86.3s, output queue size 1898
progress 90% @chrX:53000001, elapsed 0.7s, est remaining 0.1s, peak mem 486MB, user 17.4s, sys 92.2s, output queue size 2060
progress 95% @chrX:62000001, elapsed 0.7s, est remaining 0.0s, peak mem 486MB, user 18.3s, sys 97.6s, output queue size 2433
progress 100% @HLA-B*13:02:01:1, elapsed 0.8s, est remaining 0.0s, peak mem 486MB, user 18.9s, sys 109.0s, output queue size 5645
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 2942516
output file size: 2443636
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 53037 calls 38.931 user 0.254 sys 44.930 real
"predict_filter": 17679 calls 1.616 user 0.538 sys 2.234 real
advance: 3219322 calls 0.896 user 44.451 sys 49.640 real
done: 1 calls 0.002 user 0.000 sys 0.009 real
execute: 1 calls 0.005 user 0.001 sys 0.973 real
fetch_ref: 35348 calls 0.614 user 2.270 sys 2.911 real
idle: 8216 calls 5.229 user 1.372 sys 510.665 real
init: 1 calls 1.168 user 0.083 sys 1.985 real
overall: 509886464 mem 86.131 user 116.521 sys 3.971 real