File Info

Filename
1029_0I.tnseq.orientation_data.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/dfe0fe73fce00e473192d8842a9bac/1029_0I.tnseq.orientation_data.tsv
Size
9.1 KB
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2 (1029_0I)
Attempt

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#<METADATA>SAMPLE=1029_0I-T1-TDNA-1_A23KCGYLT4_1
context rev_comp f1r2_a f1r2_c f1r2_g f1r2_t f2r1_a f2r1_c f2r1_g f2r1_t hom_ref germline_het somatic_het hom_var num_examples num_alt_examples
AAA TTT 0 3.46086e-06 3.68605e-05 1.57439e-06 0 2.57043e-06 1.33415e-05 1.10147e-06 0.999231 4.62076e-05 0.000532437 0.000131783 1451031 260316
AAC GTT 0 3.72706e-06 9.22951e-05 1.02774e-06 0 1.31313e-05 4.79582e-06 1.51487e-06 0.998432 8.21084e-05 0.00109762 0.000271512 877955 150880
AAG CTT 0 9.82366e-08 5.47446e-05 2.4943e-06 0 2.1804e-06 2.6928e-05 2.61953e-07 0.998882 5.41969e-05 0.0007737 0.000203327 1422685 290757
AAT ATT 0 3.82e-06 0.000136966 2.69086e-06 0 1.90662e-05 3.97198e-05 1.58404e-06 0.998506 7.65249e-05 0.000962707 0.000250637 989863 168409
ACA TGT 4.6514e-05 0 3.70236e-06 4.98328e-05 4.59081e-05 0 2.46346e-06 2.42899e-05 0.998297 5.42293e-05 0.00124751 0.000228246 1226069 311954
ACC GGT 4.74158e-06 0 3.23246e-05 4.5775e-05 1.43881e-05 0 2.12913e-06 4.7893e-06 0.998389 9.29627e-05 0.00121193 0.000201876 1018770 238573
ACG CGT 4.59651e-05 0 2.48139e-07 0.000290824 2.69677e-05 0 6.39024e-06 8.7456e-05 0.99413 0.00118889 0.00295772 0.00126527 432009 146242
ACT AGT 1.08161e-05 0 2.45414e-05 4.40242e-05 1.05679e-05 0 1.87919e-05 3.79804e-05 0.998438 0.00012961 0.0009691 0.000316814 989331 233076
AGA TCT 8.23717e-05 3.25806e-06 0 5.39686e-06 8.83518e-05 4.90534e-06 0 4.67436e-06 0.99858 8.30889e-05 0.000994808 0.000153619 1474903 290930
AGC GCT 0.000143048 2.30826e-06 0 2.60914e-06 0.000139752 5.59151e-06 0 6.02208e-06 0.998388 3.41933e-05 0.00111819 0.000160194 1445637 355561
AGG CCT 3.31025e-05 4.46379e-06 0 2.99258e-05 4.37133e-05 1.18606e-05 0 1.42415e-05 0.998505 0.000154976 0.00103554 0.000167344 1575051 379165
AGT ACT 3.79804e-05 1.87919e-05 0 1.05679e-05 4.40242e-05 2.45414e-05 0 1.08161e-05 0.998438 0.00012961 0.0009691 0.000316814 989331 233076
ATA TAT 1.85499e-06 2.10927e-05 0.000109093 0 2.24888e-07 0.00017006 2.62349e-05 0 0.997169 4.83786e-05 0.00209577 0.000358609 697415 128345
ATC GAT 1.50844e-06 6.2595e-05 2.76352e-05 0 2.00468e-06 0.000200958 1.22593e-06 0 0.998384 3.09274e-05 0.00110192 0.000187577 997459 174195
ATG CAT 1.91273e-07 2.89333e-05 7.071e-05 0 8.35568e-08 0.000113505 1.32394e-05 0 0.997669 0.000189217 0.00140986 0.000504923 1248922 199140
ATT AAT 1.58404e-06 3.97198e-05 1.90662e-05 0 2.69086e-06 0.000136966 3.82e-06 0 0.998506 7.65249e-05 0.000962707 0.000250637 989863 168409
CAA TTG 0 9.99462e-06 4.33947e-05 1.73628e-06 0 6.2064e-06 8.50872e-06 1.87423e-07 0.998813 8.49082e-05 0.000744948 0.000287176 1195989 211645
CAC GTG 0 1.56998e-05 7.31738e-05 1.2264e-06 0 2.83038e-05 1.07772e-05 3.3021e-06 0.998054 7.46736e-05 0.00130972 0.000429439 1251506 218172
CAG CTG 0 1.23367e-06 5.42102e-05 6.26241e-07 0 9.65538e-06 2.38765e-05 2.00876e-06 0.998456 0.000111369 0.000950902 0.000390598 2039412 454039
CAT ATG 0 1.32394e-05 0.000113505 8.35568e-08 0 7.071e-05 2.89333e-05 1.91273e-07 0.997669 0.000189217 0.00140986 0.000504923 1248922 199140
CCA TGG 1.29353e-05 0 3.08773e-06 2.95027e-05 6.42936e-06 0 6.19791e-08 1.24678e-05 0.998768 6.56853e-05 0.000966715 0.000135248 1742084 393647
CCC GGG 6.13888e-06 0 1.57249e-05 5.47611e-05 6.18508e-06 0 3.35045e-07 8.15651e-06 0.998234 0.000180179 0.00132996 0.000164325 1394103 323992
CCG CGG 9.33447e-06 0 1.75881e-07 0.000158172 4.38094e-05 0 2.41164e-06 4.71304e-05 0.995495 0.00093378 0.00245997 0.000850565 744547 243784
CCT AGG 1.42415e-05 0 1.18606e-05 4.37133e-05 2.99258e-05 0 4.46379e-06 3.31025e-05 0.998505 0.000154976 0.00103554 0.000167344 1575051 379165
CGA TCG 4.74225e-05 2.8963e-07 0 1.32559e-06 0.000282705 2.39589e-07 0 1.61707e-06 0.995255 0.00106401 0.00269809 0.000649512 454283 128963
CGC GCG 0.000394303 9.29065e-06 0 1.02774e-06 0.000187004 9.14023e-07 0 1.79019e-06 0.995891 0.000562965 0.00231415 0.000637882 637618 231463
CGG CCG 4.71304e-05 2.41164e-06 0 4.38094e-05 0.000158172 1.75881e-07 0 9.33447e-06 0.995495 0.00093378 0.00245997 0.000850565 744547 243784
CGT ACG 8.7456e-05 6.39024e-06 0 2.69677e-05 0.000290824 2.48139e-07 0 4.59651e-05 0.99413 0.00118889 0.00295772 0.00126527 432009 146242
CTA TAG 4.44175e-06 2.35585e-05 8.68062e-06 0 1.78016e-07 0.000137393 4.02381e-07 0 0.997892 2.23178e-05 0.00157684 0.000334108 569860 124559
CTC GAG 2.69144e-06 6.43438e-05 2.28404e-05 0 7.61991e-08 6.84192e-05 1.33367e-07 0 0.998523 1.09766e-05 0.00111345 0.000193821 1475068 333628
CTG CAG 2.00876e-06 2.38765e-05 9.65538e-06 0 6.26241e-07 5.42102e-05 1.23367e-06 0 0.998456 0.000111369 0.000950902 0.000390598 2039412 454039
CTT AAG 2.61953e-07 2.6928e-05 2.1804e-06 0 2.4943e-06 5.47446e-05 9.82366e-08 0 0.998882 5.41969e-05 0.0007737 0.000203327 1422685 290757
GAA TTC 0 1.67804e-07 3.57437e-05 7.59465e-08 0 1.06858e-05 1.16731e-05 3.3677e-06 0.999125 2.1707e-05 0.000648217 0.000143041 1427655 253058
GAC GTC 0 1.06342e-06 0.000106814 1.2511e-07 0 2.79371e-05 1.57696e-05 5.65965e-07 0.99858 2.88484e-05 0.000981557 0.000257744 936987 174039
GAG CTC 0 1.33367e-07 6.84192e-05 7.61991e-08 0 2.28404e-05 6.43438e-05 2.69144e-06 0.998523 1.09766e-05 0.00111345 0.000193821 1475068 333628
GAT ATC 0 1.22593e-06 0.000200958 2.00468e-06 0 2.76352e-05 6.2595e-05 1.50844e-06 0.998384 3.09274e-05 0.00110192 0.000187577 997459 174195
GCA TGC 1.93331e-05 0 1.22195e-06 7.91431e-05 2.31487e-06 0 1.10921e-07 7.11168e-05 0.99885 5.80685e-05 0.00076741 0.000151189 1376080 371465
GCC GGC 5.34056e-06 0 1.16998e-05 0.000127684 1.7042e-06 0 2.38013e-06 5.16744e-05 0.998746 6.77945e-05 0.000832948 0.000152922 1498646 384053
GCG CGC 1.79019e-06 0 9.14023e-07 0.000187004 1.02774e-06 0 9.29065e-06 0.000394303 0.995891 0.000562965 0.00231415 0.000637882 637618 231463
GCT AGC 6.02208e-06 0 5.59151e-06 0.000139752 2.60914e-06 0 2.30826e-06 0.000143048 0.998388 3.41933e-05 0.00111819 0.000160194 1445637 355561
GGA TCC 2.24457e-05 7.40347e-07 0 8.44139e-06 6.74335e-05 5.31607e-06 0 3.16183e-06 0.998209 0.000364773 0.00119702 0.000122094 1489573 272538
GGC GCC 5.16744e-05 2.38013e-06 0 1.7042e-06 0.000127684 1.16998e-05 0 5.34056e-06 0.998746 6.77945e-05 0.000832948 0.000152922 1498646 384053
GGG CCC 8.15651e-06 3.35045e-07 0 6.18508e-06 5.47611e-05 1.57249e-05 0 6.13888e-06 0.998234 0.000180179 0.00132996 0.000164325 1394103 323992
GGT ACC 4.7893e-06 2.12913e-06 0 1.43881e-05 4.5775e-05 3.23246e-05 0 4.74158e-06 0.998389 9.29627e-05 0.00121193 0.000201876 1018770 238573
GTA TAC 1.43424e-06 4.26757e-06 6.54032e-05 0 1.91648e-07 7.00135e-05 4.89005e-05 0 0.998189 2.41799e-05 0.00132417 0.00027244 620738 117795
GTC GAC 5.65965e-07 1.57696e-05 2.79371e-05 0 1.2511e-07 0.000106814 1.06342e-06 0 0.99858 2.88484e-05 0.000981557 0.000257744 936987 174039
GTG CAC 3.3021e-06 1.07772e-05 2.83038e-05 0 1.2264e-06 7.31738e-05 1.56998e-05 0 0.998054 7.46736e-05 0.00130972 0.000429439 1251506 218172
GTT AAC 1.51487e-06 4.79582e-06 1.31313e-05 0 1.02774e-06 9.22951e-05 3.72706e-06 0 0.998432 8.21084e-05 0.00109762 0.000271512 877955 150880
TAA TTA 0 5.2814e-06 5.49321e-05 2.3716e-06 0 1.05552e-05 1.31893e-05 1.52462e-06 0.998641 5.57921e-05 0.000980768 0.000235024 668279 132248
TAC GTA 0 4.89005e-05 7.00135e-05 1.91648e-07 0 6.54032e-05 4.26757e-06 1.43424e-06 0.998189 2.41799e-05 0.00132417 0.00027244 620738 117795
TAG CTA 0 4.02381e-07 0.000137393 1.78016e-07 0 8.68062e-06 2.35585e-05 4.44175e-06 0.997892 2.23178e-05 0.00157684 0.000334108 569860 124559
TAT ATA 0 2.62349e-05 0.00017006 2.24888e-07 0 0.000109093 2.10927e-05 1.85499e-06 0.997169 4.83786e-05 0.00209577 0.000358609 697415 128345
TCA TGA 1.30035e-05 0 2.81833e-06 2.92111e-05 3.44906e-06 0 3.25917e-07 1.72779e-05 0.998765 0.000131566 0.000914164 0.000122965 1371116 272180
TCC GGA 3.16183e-06 0 5.31607e-06 6.74335e-05 8.44139e-06 0 7.40347e-07 2.24457e-05 0.998209 0.000364773 0.00119702 0.000122094 1489573 272538
TCG CGA 1.61707e-06 0 2.39589e-07 0.000282705 1.32559e-06 0 2.8963e-07 4.74225e-05 0.995255 0.00106401 0.00269809 0.000649512 454283 128963
TCT AGA 4.67436e-06 0 4.90534e-06 8.83518e-05 5.39686e-06 0 3.25806e-06 8.23717e-05 0.99858 8.30889e-05 0.000994808 0.000153619 1474903 290930
TGA TCA 1.72779e-05 3.25917e-07 0 3.44906e-06 2.92111e-05 2.81833e-06 0 1.30035e-05 0.998765 0.000131566 0.000914164 0.000122965 1371116 272180
TGC GCA 7.11168e-05 1.10921e-07 0 2.31487e-06 7.91431e-05 1.22195e-06 0 1.93331e-05 0.99885 5.80685e-05 0.00076741 0.000151189 1376080 371465
TGG CCA 1.24678e-05 6.19791e-08 0 6.42936e-06 2.95027e-05 3.08773e-06 0 1.29353e-05 0.998768 6.56853e-05 0.000966715 0.000135248 1742084 393647
TGT ACA 2.42899e-05 2.46346e-06 0 4.59081e-05 4.98328e-05 3.70236e-06 0 4.6514e-05 0.998297 5.42293e-05 0.00124751 0.000228246 1226069 311954
TTA TAA 1.52462e-06 1.31893e-05 1.05552e-05 0 2.3716e-06 5.49321e-05 5.2814e-06 0 0.998641 5.57921e-05 0.000980768 0.000235024 668279 132248
TTC GAA 3.3677e-06 1.16731e-05 1.06858e-05 0 7.59465e-08 3.57437e-05 1.67804e-07 0 0.999125 2.1707e-05 0.000648217 0.000143041 1427655 253058
TTG CAA 1.87423e-07 8.50872e-06 6.2064e-06 0 1.73628e-06 4.33947e-05 9.99462e-06 0 0.998813 8.49082e-05 0.000744948 0.000287176 1195989 211645
TTT AAA 1.10147e-06 1.33415e-05 2.57043e-06 0 1.57439e-06 3.68605e-05 3.46086e-06 0 0.999231 4.62076e-05 0.000532437 0.000131783 1451031 260316
66 rows