File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/218fd1dbc472b8ffdb9f9364cb3d29/.command.log
Size
893 bytes
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (1029_01S-N1-BDNA-1_B23KGCJLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/218fd1dbc472b8ffdb9f9364cb3d29/.command.sh
  Downloading: s3://ai-pipelines-experiment/chnobles/test_clean/results/norm_reference/sex_calls.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/218fd1dbc472b8ffdb9f9364cb3d29/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/0e2e25fcb17b2cf723306e3614698c/1029_01S-N1-BDNA-1_B23KGCJLT4_1_probes.tsv.gz
  Downloading: s3://ai-pipelines-experiment/chnobles/test_clean/results/norm_reference/batch_reference.parquet
==> STAGING COMPLETE (5 inputs)

Loaded 472,386 probes for 1029_01S-N1-BDNA-1_B23KGCJLT4_1
  Sex homology mask: 1494 probes set to mask=2
  5-feature GAM: R²=0.9648
  Wrote 1029_01S-N1-BDNA-1_B23KGCJLT4_1_normalized.parquet
  Wrote feature stats to 1029_01S-N1-BDNA-1_B23KGCJLT4_1_gam_stats.json
  Done in 20.2s