File Info
- Filename
- 1029_01S.tnseq.orientation_data.tsv
- Full Path
- s3://ai-pipelines-experiment/chnobles/nf_sarek_somacnv_functional_v6/results/variant_calling/tnseq/1029_01S/1029_01S.tnseq.orientation_data.tsv
- Size
- 9.0 KB
- Workflow Run
- sarek-somacnv-functional-v6
- Published
- Jun 04, 2026 10:59 AM
Content
View in new tab| #<METADATA>SAMPLE=1029_01S-T1-TDNA-1_B23KFCWLT4_1 | |||||||||||||||
| context | rev_comp | f1r2_a | f1r2_c | f1r2_g | f1r2_t | f2r1_a | f2r1_c | f2r1_g | f2r1_t | hom_ref | germline_het | somatic_het | hom_var | num_examples | num_alt_examples |
| AAA | TTT | 0 | 6.58494e-06 | 4.25429e-05 | 2.85402e-06 | 0 | 7.54216e-06 | 2.58504e-05 | 5.42886e-06 | 0.999075 | 1.52677e-05 | 0.000682672 | 0.000135843 | 1450784 | 274324 |
| AAC | GTT | 0 | 2.25052e-06 | 7.84382e-05 | 2.48615e-06 | 0 | 1.56511e-05 | 1.6289e-05 | 7.96484e-06 | 0.998219 | 2.61863e-05 | 0.00134769 | 0.000283677 | 877790 | 156219 |
| AAG | CTT | 0 | 1.71739e-06 | 4.75395e-05 | 3.16821e-06 | 0 | 4.79049e-06 | 2.55805e-05 | 1.96905e-06 | 0.998684 | 2.04494e-05 | 0.00100421 | 0.000206651 | 1422451 | 320945 |
| AAT | ATT | 0 | 1.39689e-06 | 0.000139675 | 5.95505e-06 | 0 | 3.73839e-05 | 4.52768e-05 | 6.58865e-06 | 0.998258 | 6.89458e-05 | 0.00118596 | 0.000250912 | 989802 | 176444 |
| ACA | TGT | 5.54389e-05 | 0 | 8.9307e-06 | 0.000481856 | 2.82511e-05 | 0 | 3.15911e-06 | 3.15615e-05 | 0.997609 | 9.60785e-06 | 0.00155607 | 0.000215641 | 1225825 | 414561 |
| ACC | GGT | 2.00716e-05 | 0 | 2.63334e-05 | 0.00030707 | 5.93153e-06 | 0 | 3.9571e-06 | 1.1468e-05 | 0.997913 | 1.43336e-05 | 0.00152586 | 0.000172038 | 1018549 | 311411 |
| ACG | CGT | 6.22764e-05 | 0 | 2.4906e-07 | 0.00734446 | 1.43282e-05 | 0 | 6.50878e-06 | 5.20798e-05 | 0.985992 | 0.00136173 | 0.00397615 | 0.00118999 | 431940 | 204357 |
| ACT | AGT | 1.81963e-05 | 0 | 3.41361e-05 | 0.000462263 | 9.38024e-06 | 0 | 2.3388e-05 | 4.1455e-05 | 0.997779 | 1.84882e-05 | 0.00130877 | 0.000304709 | 989216 | 318839 |
| AGA | TCT | 8.19551e-05 | 2.12648e-06 | 0 | 4.78165e-07 | 0.000267834 | 1.02982e-05 | 0 | 8.9948e-06 | 0.998357 | 1.43681e-05 | 0.00112214 | 0.000134837 | 1474707 | 386640 |
| AGC | GCT | 0.000115051 | 2.79284e-06 | 0 | 1.15438e-07 | 0.000548449 | 5.68599e-06 | 0 | 8.08956e-06 | 0.997744 | 2.1241e-06 | 0.00143135 | 0.000142597 | 1445326 | 472645 |
| AGG | CCT | 2.67661e-05 | 5.31632e-06 | 0 | 1.05922e-05 | 0.000260552 | 1.28282e-05 | 0 | 1.93638e-05 | 0.998273 | 2.36808e-05 | 0.00122423 | 0.000143884 | 1574744 | 481053 |
| AGT | ACT | 4.1455e-05 | 2.3388e-05 | 0 | 9.38024e-06 | 0.000462263 | 3.41361e-05 | 0 | 1.81963e-05 | 0.997779 | 1.84882e-05 | 0.00130877 | 0.000304709 | 989216 | 318839 |
| ATA | TAT | 2.66597e-05 | 3.27094e-05 | 0.00012018 | 0 | 1.17364e-05 | 0.000257811 | 2.27705e-05 | 0 | 0.996789 | 2.02811e-05 | 0.00235989 | 0.000358556 | 697361 | 135761 |
| ATC | GAT | 7.71467e-06 | 5.39346e-05 | 3.07541e-05 | 0 | 1.67587e-06 | 0.000201447 | 1.11734e-06 | 0 | 0.998215 | 5.51077e-06 | 0.00127542 | 0.000207689 | 997377 | 179315 |
| ATG | CAT | 2.9856e-06 | 2.99436e-05 | 9.55528e-05 | 0 | 3.4343e-06 | 0.000120771 | 8.6108e-06 | 0 | 0.997321 | 0.00015316 | 0.00174586 | 0.000518741 | 1248782 | 212553 |
| ATT | AAT | 6.58865e-06 | 4.52768e-05 | 3.73839e-05 | 0 | 5.95505e-06 | 0.000139675 | 1.39689e-06 | 0 | 0.998258 | 6.89458e-05 | 0.00118596 | 0.000250912 | 989802 | 176444 |
| CAA | TTG | 0 | 9.03048e-06 | 3.47492e-05 | 1.67082e-06 | 0 | 9.65387e-06 | 1.96584e-05 | 3.7204e-06 | 0.998662 | 4.98967e-05 | 0.000926916 | 0.000282732 | 1195745 | 227503 |
| CAC | GTG | 0 | 1.26479e-05 | 6.45735e-05 | 1.31333e-06 | 0 | 4.12213e-05 | 9.19959e-06 | 1.84284e-06 | 0.99773 | 4.11331e-05 | 0.00166194 | 0.000436265 | 1251255 | 224312 |
| CAG | CTG | 0 | 6.89095e-06 | 4.79989e-05 | 1.62476e-06 | 0 | 8.16595e-06 | 2.00092e-05 | 3.5614e-06 | 0.998142 | 6.68154e-05 | 0.00131172 | 0.000391604 | 2039068 | 497664 |
| CAT | ATG | 0 | 8.6108e-06 | 0.000120771 | 3.4343e-06 | 0 | 9.55528e-05 | 2.99436e-05 | 2.9856e-06 | 0.997321 | 0.00015316 | 0.00174586 | 0.000518741 | 1248782 | 212553 |
| CCA | TGG | 2.73588e-05 | 0 | 5.91463e-08 | 0.00015549 | 2.85885e-06 | 0 | 1.60117e-07 | 2.27672e-05 | 0.998612 | 6.89026e-06 | 0.001064 | 0.000108315 | 1741819 | 495783 |
| CCC | GGG | 8.10974e-06 | 0 | 1.3583e-05 | 0.00020343 | 2.99165e-06 | 0 | 5.57302e-07 | 1.04677e-05 | 0.99804 | 1.41868e-05 | 0.00154862 | 0.000157564 | 1394048 | 403178 |
| CCG | CGG | 9.4088e-06 | 0 | 8.32466e-06 | 0.00228623 | 8.02677e-06 | 0 | 3.74177e-06 | 2.48349e-05 | 0.992932 | 0.000842161 | 0.00307153 | 0.000813806 | 744476 | 327334 |
| CCT | AGG | 1.93638e-05 | 0 | 1.28282e-05 | 0.000260552 | 1.05922e-05 | 0 | 5.31632e-06 | 2.67661e-05 | 0.998273 | 2.36808e-05 | 0.00122423 | 0.000143884 | 1574744 | 481053 |
| CGA | TCG | 5.86172e-05 | 4.86373e-07 | 0 | 3.32551e-07 | 0.00652416 | 2.64462e-07 | 0 | 1.15435e-05 | 0.989627 | 0.000384929 | 0.00280687 | 0.000586172 | 454222 | 193614 |
| CGC | GCG | 0.000343114 | 1.22626e-05 | 0 | 2.75194e-06 | 0.00171401 | 1.96398e-07 | 0 | 3.4795e-06 | 0.993663 | 0.000317328 | 0.00331157 | 0.000632328 | 637470 | 298904 |
| CGG | CCG | 2.48349e-05 | 3.74177e-06 | 0 | 8.02677e-06 | 0.00228623 | 8.32466e-06 | 0 | 9.4088e-06 | 0.992932 | 0.000842161 | 0.00307153 | 0.000813806 | 744476 | 327334 |
| CGT | ACG | 5.20798e-05 | 6.50878e-06 | 0 | 1.43282e-05 | 0.00734446 | 2.4906e-07 | 0 | 6.22764e-05 | 0.985992 | 0.00136173 | 0.00397615 | 0.00118999 | 431940 | 204357 |
| CTA | TAG | 5.56008e-06 | 2.28718e-05 | 3.95286e-06 | 0 | 3.43887e-06 | 0.000216834 | 1.01589e-06 | 0 | 0.997453 | 1.73176e-05 | 0.00198619 | 0.000289809 | 569776 | 135056 |
| CTC | GAG | 4.67314e-06 | 4.89348e-05 | 1.28142e-05 | 0 | 3.46593e-06 | 7.72086e-05 | 2.328e-06 | 0 | 0.99821 | 2.90009e-06 | 0.00144921 | 0.000188641 | 1474719 | 356185 |
| CTG | CAG | 3.5614e-06 | 2.00092e-05 | 8.16595e-06 | 0 | 1.62476e-06 | 4.79989e-05 | 6.89095e-06 | 0 | 0.998142 | 6.68154e-05 | 0.00131172 | 0.000391604 | 2039068 | 497664 |
| CTT | AAG | 1.96905e-06 | 2.55805e-05 | 4.79049e-06 | 0 | 3.16821e-06 | 4.75395e-05 | 1.71739e-06 | 0 | 0.998684 | 2.04494e-05 | 0.00100421 | 0.000206651 | 1422451 | 320945 |
| GAA | TTC | 0 | 1.57187e-06 | 3.30246e-05 | 2.37763e-06 | 0 | 3.02465e-06 | 1.73551e-05 | 3.96432e-06 | 0.998988 | 6.83437e-06 | 0.000790791 | 0.000153484 | 1427505 | 264926 |
| GAC | GTC | 0 | 4.26791e-06 | 0.000105818 | 8.07981e-07 | 0 | 1.87045e-05 | 2.44215e-05 | 6.77285e-06 | 0.998342 | 9.15972e-06 | 0.00123841 | 0.000249344 | 936774 | 176609 |
| GAG | CTC | 0 | 2.328e-06 | 7.72086e-05 | 3.46593e-06 | 0 | 1.28142e-05 | 4.89348e-05 | 4.67314e-06 | 0.99821 | 2.90009e-06 | 0.00144921 | 0.000188641 | 1474719 | 356185 |
| GAT | ATC | 0 | 1.11734e-06 | 0.000201447 | 1.67587e-06 | 0 | 3.07541e-05 | 5.39346e-05 | 7.71467e-06 | 0.998215 | 5.51077e-06 | 0.00127542 | 0.000207689 | 997377 | 179315 |
| GCA | TGC | 1.68132e-05 | 0 | 3.43078e-06 | 0.000358998 | 6.39672e-06 | 0 | 7.06714e-07 | 6.02985e-05 | 0.99833 | 1.33517e-05 | 0.00107115 | 0.000139256 | 1375847 | 448101 |
| GCC | GGC | 9.14775e-06 | 0 | 1.31368e-05 | 0.000367094 | 2.23689e-07 | 0 | 6.40127e-06 | 3.23137e-05 | 0.998312 | 1.42814e-05 | 0.00109532 | 0.000150225 | 1498459 | 482162 |
| GCG | CGC | 3.4795e-06 | 0 | 1.96398e-07 | 0.00171401 | 2.75194e-06 | 0 | 1.22626e-05 | 0.000343114 | 0.993663 | 0.000317328 | 0.00331157 | 0.000632328 | 637470 | 298904 |
| GCT | AGC | 8.08956e-06 | 0 | 5.68599e-06 | 0.000548449 | 1.15438e-07 | 0 | 2.79284e-06 | 0.000115051 | 0.997744 | 2.1241e-06 | 0.00143135 | 0.000142597 | 1445326 | 472645 |
| GGA | TCC | 3.67548e-05 | 3.69089e-07 | 0 | 2.39982e-06 | 0.000100298 | 7.52883e-06 | 0 | 1.0082e-05 | 0.998752 | 1.403e-05 | 0.000964958 | 0.0001115 | 1489298 | 323156 |
| GGC | GCC | 3.23137e-05 | 6.40127e-06 | 0 | 2.23689e-07 | 0.000367094 | 1.31368e-05 | 0 | 9.14775e-06 | 0.998312 | 1.42814e-05 | 0.00109532 | 0.000150225 | 1498459 | 482162 |
| GGG | CCC | 1.04677e-05 | 5.57302e-07 | 0 | 2.99165e-06 | 0.00020343 | 1.3583e-05 | 0 | 8.10974e-06 | 0.99804 | 1.41868e-05 | 0.00154862 | 0.000157564 | 1394048 | 403178 |
| GGT | ACC | 1.1468e-05 | 3.9571e-06 | 0 | 5.93153e-06 | 0.00030707 | 2.63334e-05 | 0 | 2.00716e-05 | 0.997913 | 1.43336e-05 | 0.00152586 | 0.000172038 | 1018549 | 311411 |
| GTA | TAC | 1.30991e-05 | 1.22075e-05 | 5.1627e-05 | 0 | 4.70563e-06 | 8.35531e-05 | 2.66639e-05 | 0 | 0.997977 | 1.51067e-05 | 0.00155625 | 0.000259449 | 620679 | 122280 |
| GTC | GAC | 6.77285e-06 | 2.44215e-05 | 1.87045e-05 | 0 | 8.07981e-07 | 0.000105818 | 4.26791e-06 | 0 | 0.998342 | 9.15972e-06 | 0.00123841 | 0.000249344 | 936774 | 176609 |
| GTG | CAC | 1.84284e-06 | 9.19959e-06 | 4.12213e-05 | 0 | 1.31333e-06 | 6.45735e-05 | 1.26479e-05 | 0 | 0.99773 | 4.11331e-05 | 0.00166194 | 0.000436265 | 1251255 | 224312 |
| GTT | AAC | 7.96484e-06 | 1.6289e-05 | 1.56511e-05 | 0 | 2.48615e-06 | 7.84382e-05 | 2.25052e-06 | 0 | 0.998219 | 2.61863e-05 | 0.00134769 | 0.000283677 | 877790 | 156219 |
| TAA | TTA | 0 | 1.70316e-05 | 6.32017e-05 | 1.21231e-05 | 0 | 6.20824e-06 | 1.71841e-05 | 1.04457e-05 | 0.998443 | 1.63301e-05 | 0.00120333 | 0.000211079 | 668254 | 140614 |
| TAC | GTA | 0 | 2.66639e-05 | 8.35531e-05 | 4.70563e-06 | 0 | 5.1627e-05 | 1.22075e-05 | 1.30991e-05 | 0.997977 | 1.51067e-05 | 0.00155625 | 0.000259449 | 620679 | 122280 |
| TAG | CTA | 0 | 1.01589e-06 | 0.000216834 | 3.43887e-06 | 0 | 3.95286e-06 | 2.28718e-05 | 5.56008e-06 | 0.997453 | 1.73176e-05 | 0.00198619 | 0.000289809 | 569776 | 135056 |
| TAT | ATA | 0 | 2.27705e-05 | 0.000257811 | 1.17364e-05 | 0 | 0.00012018 | 3.27094e-05 | 2.66597e-05 | 0.996789 | 2.02811e-05 | 0.00235989 | 0.000358556 | 697361 | 135761 |
| TCA | TGA | 1.48969e-05 | 0 | 4.97673e-06 | 0.000126671 | 1.26169e-06 | 0 | 2.53452e-06 | 3.15539e-05 | 0.998748 | 1.17011e-05 | 0.000945602 | 0.000112643 | 1370899 | 346499 |
| TCC | GGA | 1.0082e-05 | 0 | 7.52883e-06 | 0.000100298 | 2.39982e-06 | 0 | 3.69089e-07 | 3.67548e-05 | 0.998752 | 1.403e-05 | 0.000964958 | 0.0001115 | 1489298 | 323156 |
| TCG | CGA | 1.15435e-05 | 0 | 2.64462e-07 | 0.00652416 | 3.32551e-07 | 0 | 4.86373e-07 | 5.86172e-05 | 0.989627 | 0.000384929 | 0.00280687 | 0.000586172 | 454222 | 193614 |
| TCT | AGA | 8.9948e-06 | 0 | 1.02982e-05 | 0.000267834 | 4.78165e-07 | 0 | 2.12648e-06 | 8.19551e-05 | 0.998357 | 1.43681e-05 | 0.00112214 | 0.000134837 | 1474707 | 386640 |
| TGA | TCA | 3.15539e-05 | 2.53452e-06 | 0 | 1.26169e-06 | 0.000126671 | 4.97673e-06 | 0 | 1.48969e-05 | 0.998748 | 1.17011e-05 | 0.000945602 | 0.000112643 | 1370899 | 346499 |
| TGC | GCA | 6.02985e-05 | 7.06714e-07 | 0 | 6.39672e-06 | 0.000358998 | 3.43078e-06 | 0 | 1.68132e-05 | 0.99833 | 1.33517e-05 | 0.00107115 | 0.000139256 | 1375847 | 448101 |
| TGG | CCA | 2.27672e-05 | 1.60117e-07 | 0 | 2.85885e-06 | 0.00015549 | 5.91463e-08 | 0 | 2.73588e-05 | 0.998612 | 6.89026e-06 | 0.001064 | 0.000108315 | 1741819 | 495783 |
| TGT | ACA | 3.15615e-05 | 3.15911e-06 | 0 | 2.82511e-05 | 0.000481856 | 8.9307e-06 | 0 | 5.54389e-05 | 0.997609 | 9.60785e-06 | 0.00155607 | 0.000215641 | 1225825 | 414561 |
| TTA | TAA | 1.04457e-05 | 1.71841e-05 | 6.20824e-06 | 0 | 1.21231e-05 | 6.32017e-05 | 1.70316e-05 | 0 | 0.998443 | 1.63301e-05 | 0.00120333 | 0.000211079 | 668254 | 140614 |
| TTC | GAA | 3.96432e-06 | 1.73551e-05 | 3.02465e-06 | 0 | 2.37763e-06 | 3.30246e-05 | 1.57187e-06 | 0 | 0.998988 | 6.83437e-06 | 0.000790791 | 0.000153484 | 1427505 | 264926 |
| TTG | CAA | 3.7204e-06 | 1.96584e-05 | 9.65387e-06 | 0 | 1.67082e-06 | 3.47492e-05 | 9.03048e-06 | 0 | 0.998662 | 4.98967e-05 | 0.000926916 | 0.000282732 | 1195745 | 227503 |
| TTT | AAA | 5.42886e-06 | 2.58504e-05 | 7.54216e-06 | 0 | 2.85402e-06 | 4.25429e-05 | 6.58494e-06 | 0 | 0.999075 | 1.52677e-05 | 0.000682672 | 0.000135843 | 1450784 | 274324 |
66 rows