.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_EXPORT_VIEWER (1029_0W2)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/5ba4d7152404e72c20b964d4502c80/.command.log
Size: 1.2 KB
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_EXPORT_VIEWER (1029_0W2)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/f03e1279636acc680957fa8f4828ba/1029_0W2_segments.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/f03e1279636acc680957fa8f4828ba/1029_0W2_probe_agg.tsv.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/5ba4d7152404e72c20b964d4502c80/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/5ba4d7152404e72c20b964d4502c80/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/f03e1279636acc680957fa8f4828ba/pairs.tsv
==> STAGING COMPLETE (5 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-0rnxh3cy because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
Batch mode: 1 of 1 specimens
Loaded probe_agg for 1 specimens (435,078 probes) in 0.9s
Computed genome offsets
Exporting 1 specimens with 4 workers...

  [1/1]
Exported 1 specimens to viewer/ (3 MB total) in 1.5s