cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 --normal_sample 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 --max_event_count 5 -v 1029_0W2.tnseq.vcf.gz --contamination 1029_0W2.tnseq.contamination_data.tsv --tumor_segments 1029_0W2.tnseq.segments --orientation_priors 1029_0W2.tnseq.orientation_data.tsv 1029_0W2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119000001, elapsed 0.1s, est remaining 2.3s, peak mem 987MB, user 0.2s, sys 1.6s, output queue size 161
progress 10% @chr3:79000001, elapsed 0.2s, est remaining 1.8s, peak mem 987MB, user 0.8s, sys 10.6s, output queue size 320
progress 15% @chr1:242000001, elapsed 0.2s, est remaining 1.3s, peak mem 987MB, user 1.8s, sys 22.6s, output queue size 482
progress 20% @chr4:105000001, elapsed 0.3s, est remaining 1.1s, peak mem 987MB, user 3.0s, sys 36.0s, output queue size 622
progress 25% @chr5:124000001, elapsed 0.4s, est remaining 1.1s, peak mem 987MB, user 3.8s, sys 48.5s, output queue size 783
progress 30% @chr6:6000001, elapsed 0.4s, est remaining 1.0s, peak mem 987MB, user 4.5s, sys 61.5s, output queue size 712
progress 35% @chr8:23000001, elapsed 0.5s, est remaining 0.9s, peak mem 987MB, user 5.1s, sys 72.9s, output queue size 873
progress 40% @chr9:31000001, elapsed 0.5s, est remaining 0.8s, peak mem 987MB, user 6.0s, sys 83.8s, output queue size 1035
progress 45% @chr9:20000001, elapsed 0.6s, est remaining 0.7s, peak mem 987MB, user 7.0s, sys 95.3s, output queue size 1197
progress 50% @chr11:67000001, elapsed 0.6s, est remaining 0.6s, peak mem 987MB, user 7.8s, sys 105.9s, output queue size 1359
progress 55% @chr9:55000001, elapsed 0.7s, est remaining 0.6s, peak mem 987MB, user 9.1s, sys 116.5s, output queue size 1519
progress 60% @chr12:17000001, elapsed 0.7s, est remaining 0.5s, peak mem 987MB, user 10.1s, sys 126.7s, output queue size 1683
progress 65% @chr15:60000001, elapsed 0.8s, est remaining 0.4s, peak mem 987MB, user 10.9s, sys 136.8s, output queue size 1844
progress 70% @chr17:22000001, elapsed 0.8s, est remaining 0.4s, peak mem 987MB, user 11.9s, sys 148.3s, output queue size 2005
progress 75% @chr13:98000001, elapsed 0.9s, est remaining 0.3s, peak mem 987MB, user 12.8s, sys 159.4s, output queue size 2167
progress 80% @chr20:61000001, elapsed 0.9s, est remaining 0.2s, peak mem 987MB, user 13.6s, sys 169.7s, output queue size 2329
progress 85% @chrX:4000001, elapsed 1.0s, est remaining 0.2s, peak mem 987MB, user 14.6s, sys 182.5s, output queue size 2490
progress 90% @chrX:106000001, elapsed 1.1s, est remaining 0.1s, peak mem 987MB, user 15.5s, sys 197.1s, output queue size 2825
progress 95% @chrX:25000001, elapsed 1.1s, est remaining 0.1s, peak mem 987MB, user 16.2s, sys 214.9s, output queue size 3764
progress 100% @HLA-DRB1*13:01:01:1, elapsed 1.2s, est remaining 0.0s, peak mem 987MB, user 17.6s, sys 281.4s, output queue size 6238
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 3820928
output file size: 2960248
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 67869 calls 72.390 user 1.094 sys 88.088 real
"predict_filter": 22623 calls 1.792 user 1.599 sys 3.617 real
advance: 3219322 calls 0.965 user 104.685 sys 85.721 real
done: 1 calls 0.005 user 0.000 sys 0.012 real
execute: 1 calls 0.009 user 0.000 sys 1.508 real
fetch_ref: 49644 calls 1.469 user 2.253 sys 9.570 real
idle: 20633 calls 14.242 user 2.008 sys 1332.077 real
init: 1 calls 1.429 user 0.517 sys 2.643 real
overall: 1035137024 mem 129.871 user 291.323 sys 5.228 real