#!/bin/bash -Ceuo pipefail
python /usr/local/bin/export_viewer.py \
    --probe-agg 1029_01S_probe_agg.tsv.gz \
    --pairs pairs.tsv \
    --segments 1029_01S_segments.tsv \
    --output-dir viewer \
    --specimens-file <(echo "1029_01S") \
    --workers 4

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_EXPORT_VIEWER":
    soma-cnv: 20260604-914d02b
END_VERSIONS