cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample 1029_11H-T1-TDNA-1_B23KFCWLT4_1 --normal_sample 1029_11H-N1-BDNA-1_B23KGCJLT4_1 --max_event_count 5 -v 1029_11H.tnseq.vcf.gz --contamination 1029_11H.tnseq.contamination_data.tsv --tumor_segments 1029_11H.tnseq.segments --orientation_priors 1029_11H.tnseq.orientation_data.tsv 1029_11H.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:203000001, elapsed 0.1s, est remaining 2.5s, peak mem 960MB, user 0.4s, sys 2.9s, output queue size 162
progress 10% @chr3:23000001, elapsed 0.2s, est remaining 1.7s, peak mem 960MB, user 1.2s, sys 12.8s, output queue size 322
progress 15% @chr1:70000001, elapsed 0.2s, est remaining 1.4s, peak mem 960MB, user 1.8s, sys 22.7s, output queue size 483
progress 20% @chr4:164000001, elapsed 0.3s, est remaining 1.2s, peak mem 960MB, user 2.5s, sys 36.2s, output queue size 639
progress 25% @chr5:159000001, elapsed 0.4s, est remaining 1.1s, peak mem 960MB, user 3.1s, sys 44.4s, output queue size 799
progress 30% @chr7:1, elapsed 0.4s, est remaining 1.0s, peak mem 960MB, user 3.4s, sys 54.1s, output queue size 960
progress 35% @chr8:31000001, elapsed 0.5s, est remaining 0.9s, peak mem 960MB, user 3.9s, sys 62.8s, output queue size 1123
progress 40% @chr9:26000001, elapsed 0.5s, est remaining 0.8s, peak mem 960MB, user 4.5s, sys 72.1s, output queue size 1279
progress 45% @chr9:47000001, elapsed 0.6s, est remaining 0.7s, peak mem 960MB, user 5.2s, sys 81.7s, output queue size 1441
progress 50% @chr4:84000001, elapsed 0.6s, est remaining 0.6s, peak mem 960MB, user 6.0s, sys 90.8s, output queue size 1603
progress 55% @chr9:94000001, elapsed 0.7s, est remaining 0.5s, peak mem 960MB, user 6.7s, sys 101.4s, output queue size 1765
progress 60% @chr11:116000001, elapsed 0.7s, est remaining 0.5s, peak mem 960MB, user 7.1s, sys 111.0s, output queue size 1666
progress 65% @chr15:67000001, elapsed 0.8s, est remaining 0.4s, peak mem 960MB, user 7.6s, sys 120.5s, output queue size 1827
progress 70% @chr17:56000001, elapsed 0.8s, est remaining 0.4s, peak mem 960MB, user 8.3s, sys 129.7s, output queue size 1989
progress 75% @chr15:47000001, elapsed 0.9s, est remaining 0.3s, peak mem 960MB, user 8.8s, sys 139.7s, output queue size 2151
progress 80% @chr15:48000001, elapsed 0.9s, est remaining 0.2s, peak mem 960MB, user 9.3s, sys 151.4s, output queue size 2313
progress 85% @chrY:1000001, elapsed 1.0s, est remaining 0.2s, peak mem 960MB, user 9.8s, sys 160.3s, output queue size 2492
progress 90% @chr19_KI270890v1_alt:1, elapsed 1.1s, est remaining 0.1s, peak mem 960MB, user 10.4s, sys 172.7s, output queue size 2902
progress 95% @chr19_GL949749v2_alt:1, elapsed 1.1s, est remaining 0.1s, peak mem 960MB, user 10.8s, sys 190.0s, output queue size 3914
progress 100% @HLA-C*17:01:01:01:1, elapsed 1.2s, est remaining 0.0s, peak mem 960MB, user 12.0s, sys 241.1s, output queue size 6221
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 2168680
output file size: 2021681
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 41547 calls 13.503 user 0.213 sys 20.110 real
"predict_filter": 13849 calls 0.883 user 1.010 sys 2.379 real
advance: 3219322 calls 1.115 user 87.815 sys 92.974 real
done: 1 calls 0.005 user 0.000 sys 0.010 real
execute: 1 calls 0.004 user 0.002 sys 1.413 real
fetch_ref: 21332 calls 0.329 user 1.889 sys 22.871 real
idle: 20633 calls 8.362 user 1.572 sys 1080.210 real
init: 1 calls 1.049 user 0.407 sys 1.768 real
overall: 1006768128 mem 49.642 user 249.236 sys 4.341 real