cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample 1029_16G-T1-TDNA-1_B23KFCWLT4_1 --normal_sample 1029_16G-N1-BDNA-1_B23KGCJLT4_1 --max_event_count 5 -v 1029_16G.tnseq.vcf.gz --contamination 1029_16G.tnseq.contamination_data.tsv --tumor_segments 1029_16G.tnseq.segments --orientation_priors 1029_16G.tnseq.orientation_data.tsv 1029_16G.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr3:4000001, elapsed 0.1s, est remaining 2.2s, peak mem 933MB, user 0.1s, sys 2.6s, output queue size 162
progress 10% @chr3:79000001, elapsed 0.2s, est remaining 1.6s, peak mem 933MB, user 0.5s, sys 13.0s, output queue size 321
progress 15% @chr4:7000001, elapsed 0.2s, est remaining 1.3s, peak mem 933MB, user 1.3s, sys 24.9s, output queue size 483
progress 20% @chr4:84000001, elapsed 0.3s, est remaining 1.1s, peak mem 933MB, user 2.1s, sys 38.2s, output queue size 617
progress 25% @chr5:128000001, elapsed 0.3s, est remaining 1.0s, peak mem 933MB, user 2.7s, sys 48.4s, output queue size 778
progress 30% @chr5:153000001, elapsed 0.4s, est remaining 0.9s, peak mem 933MB, user 3.3s, sys 57.7s, output queue size 939
progress 35% @chr7:73000001, elapsed 0.4s, est remaining 0.8s, peak mem 933MB, user 3.8s, sys 66.8s, output queue size 1101
progress 40% @chr9:23000001, elapsed 0.5s, est remaining 0.7s, peak mem 933MB, user 4.3s, sys 76.2s, output queue size 1263
progress 45% @chr10:74000001, elapsed 0.5s, est remaining 0.6s, peak mem 933MB, user 4.8s, sys 84.6s, output queue size 1205
progress 50% @chr11:3000001, elapsed 0.6s, est remaining 0.6s, peak mem 933MB, user 5.2s, sys 93.2s, output queue size 1366
progress 55% @chr12:14000001, elapsed 0.6s, est remaining 0.5s, peak mem 933MB, user 5.8s, sys 101.8s, output queue size 1528
progress 60% @chr12:13000001, elapsed 0.7s, est remaining 0.4s, peak mem 933MB, user 6.3s, sys 109.8s, output queue size 1691
progress 65% @chr13:112000001, elapsed 0.7s, est remaining 0.4s, peak mem 933MB, user 6.8s, sys 117.9s, output queue size 1852
progress 70% @chr17:43000001, elapsed 0.8s, est remaining 0.3s, peak mem 933MB, user 7.5s, sys 127.3s, output queue size 2014
progress 75% @chr19:49000001, elapsed 0.8s, est remaining 0.3s, peak mem 933MB, user 8.0s, sys 135.3s, output queue size 2176
progress 80% @chr22:28000001, elapsed 0.9s, est remaining 0.2s, peak mem 933MB, user 8.7s, sys 144.4s, output queue size 2337
progress 85% @chr12:127000001, elapsed 0.9s, est remaining 0.2s, peak mem 933MB, user 9.5s, sys 154.7s, output queue size 2514
progress 90% @chr17_JH159148v1_alt:1, elapsed 1.0s, est remaining 0.1s, peak mem 933MB, user 10.0s, sys 164.4s, output queue size 3078
progress 95% @chr6_GL000253v2_alt:1000001, elapsed 1.0s, est remaining 0.1s, peak mem 933MB, user 10.8s, sys 180.3s, output queue size 4170
progress 100% @HLA-B*53:11:1, elapsed 1.1s, est remaining 0.0s, peak mem 933MB, user 11.9s, sys 231.5s, output queue size 6246
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 2016845
output file size: 1828234
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 36804 calls 30.863 user 0.323 sys 40.568 real
"predict_filter": 12268 calls 0.914 user 0.789 sys 2.030 real
advance: 3219322 calls 1.428 user 94.698 sys 78.473 real
done: 1 calls 0.005 user 0.000 sys 0.009 real
execute: 1 calls 0.007 user 0.004 sys 1.317 real
fetch_ref: 22040 calls 0.383 user 1.700 sys 17.513 real
idle: 20633 calls 10.378 user 0.748 sys 1115.936 real
init: 1 calls 1.132 user 0.430 sys 1.941 real
overall: 978522112 mem 75.133 user 239.975 sys 4.425 real