File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/8accb4f7ce0946a1609b05201fc8e6/.command.log
Size
889 bytes
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (1029_0I-T1-TDNA-1_A23KCGYLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/8accb4f7ce0946a1609b05201fc8e6/.command.sh
  Downloading: s3://ai-pipelines-experiment/chnobles/test_clean/results/norm_reference/sex_calls.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/8accb4f7ce0946a1609b05201fc8e6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/e53f976928465f49613d491fd6a4d3/1029_0I-T1-TDNA-1_A23KCGYLT4_1_probes.tsv.gz
  Downloading: s3://ai-pipelines-experiment/chnobles/test_clean/results/norm_reference/batch_reference.parquet
==> STAGING COMPLETE (5 inputs)

Loaded 472,386 probes for 1029_0I-T1-TDNA-1_A23KCGYLT4_1
  Sex homology mask: 1494 probes set to mask=2
  5-feature GAM: R²=0.8037
  Wrote 1029_0I-T1-TDNA-1_A23KCGYLT4_1_normalized.parquet
  Wrote feature stats to 1029_0I-T1-TDNA-1_A23KCGYLT4_1_gam_stats.json
  Done in 13.8s