.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:TIH_HRD_CALLING (1029_0W2)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/384777c2eca35e45d2862e1670dc7d/.command.log
Size: 1.3 KB
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:TIH_HRD_CALLING (1029_0W2)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/0bdc3048505f5130634f18d0f57745/1029_0W2.vcf.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/hrd_score_altera_bam/dbsnp_baseline_altera.260120.tsv.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/384777c2eca35e45d2862e1670dc7d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-087e6159-bdd4-499b-a7f2-c4c1fc32b06a/9b/562b86a12f3b46c855741ec0e03cb4/hrd_score_altera_bam
ERROR "ls s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-087e6159-bdd4-499b-a7f2-c4c1fc32b06a/9b/562b86a12f3b46c855741ec0e03cb4/hrd_score_altera_bam": no object found
ERROR "cp s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-087e6159-bdd4-499b-a7f2-c4c1fc32b06a/9b/562b86a12f3b46c855741ec0e03cb4/hrd_score_altera_bam hrd_score_altera_bam": NoSuchKey: The specified key does not exist. status code: 404, request id: D0CSRPEYJJXJ0PS4, host id: tWyibopl3X367IvYVxKn6ojK+L7ioxi5DSbDwwfDroMJw0WT0zfFRjMSSx7KMcJnIAhRUiBWUiiZIQSKZVBUrJISgSGoii7P
ERROR "cp s3://natera-platform-sandbox/pipeline-resources/AIH/hrd_score_altera_bam/dbsnp_baseline_altera.260120.tsv.gz dbsnp_baseline_altera.260120.tsv.gz": rename ./dbsnp_baseline_altera.260120.tsv.gz2772179878 dbsnp_baseline_altera.260120.tsv.gz: no such file or directory