File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/9806c66e103739e942009d02619d2f/.command.log
Size
1.5 KB
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:TIH_HRD_CALLING (1029_0W2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/0bdc3048505f5130634f18d0f57745/1029_0W2.vcf.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/hrd_score_altera_bam/dbsnp_baseline_altera.260120.tsv.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/9806c66e103739e942009d02619d2f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-087e6159-bdd4-499b-a7f2-c4c1fc32b06a/9b/562b86a12f3b46c855741ec0e03cb4/hrd_score_altera_bam
ERROR "ls s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-087e6159-bdd4-499b-a7f2-c4c1fc32b06a/9b/562b86a12f3b46c855741ec0e03cb4/hrd_score_altera_bam": no object found
ERROR "cp s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-087e6159-bdd4-499b-a7f2-c4c1fc32b06a/9b/562b86a12f3b46c855741ec0e03cb4/hrd_score_altera_bam hrd_score_altera_bam": NoSuchKey: The specified key does not exist. status code: 404, request id: HGXH5NTPKWF6BKV9, host id: myjrN4q5Hlmkd4sQK0Emg5hqLFed1JKT+VMBvlBo45NNsEtY2g6+VSJIST2CMXdY4hpbSBvpociLal6ft7RfbUVhwo+FgBE1
ERROR "cp s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/0bdc3048505f5130634f18d0f57745/1029_0W2.vcf.gz 1029_0W2.vcf.gz": rename ./1029_0W2.vcf.gz24824285 1029_0W2.vcf.gz: no such file or directory
ERROR "cp s3://natera-platform-sandbox/pipeline-resources/AIH/hrd_score_altera_bam/dbsnp_baseline_altera.260120.tsv.gz dbsnp_baseline_altera.260120.tsv.gz": rename ./dbsnp_baseline_altera.260120.tsv.gz1955249051 dbsnp_baseline_altera.260120.tsv.gz: no such file or directory