Error executing process > 'NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2 (1029_11H)'

Caused by:
  K8s pod 'nf-4f5aecba93968556bb9241a2296449c7-40dbd-bstcz' execution failed - reason: Evicted - message: Pod ephemeral local storage usage exceeds the total limit of containers 20Gi. 


Command executed:

  sentieon driver \
      -t 36 \
      -r Homo_sapiens_assembly38.fasta \
       \
      -i 1029_11H-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam -i 1029_11H-T1-TDNA-1_B23KFCWLT4_1.recalibrated.bam \
      --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed \
      --algo TNhaplotyper2 \
      --tumor_sample 1029_11H-T1-TDNA-1_B23KFCWLT4_1 --normal_sample 1029_11H-N1-BDNA-1_B23KGCJLT4_1 \
      --call_germline_sites \
      --germline_vcf af-only-gnomad.hg38.vcf.gz \
      --pon pon_tnseq_42_curated_v4.vcf.gz \
      1029_11H.tnseq.vcf.gz \
      --algo OrientationBias --tumor_sample 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H.tnseq.orientation_data.tsv \
      --algo ContaminationModel --tumor_sample 1029_11H-T1-TDNA-1_B23KFCWLT4_1 --normal_sample 1029_11H-N1-BDNA-1_B23KGCJLT4_1 --vcf af-only-gnomad.hg38.vcf.gz --tumor_segments 1029_11H.tnseq.segments 1029_11H.tnseq.contamination_data.tsv
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2":
      sentieon: $(echo $(sentieon driver --version 2>&1) | sed -e "s/sentieon-genomics-//g")
  END_VERSIONS

Command exit status:
  -

Command output:
  (empty)

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/5aecba93968556bb9241a2296449c7

Container:
  community.wave.seqera.io/library/sentieon:202308.03--b599c8ad694846bd

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`