Error executing process > 'NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_tumor)'

Caused by:
  Process `NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_tumor)` terminated with an error exit status (1)


Command executed:

  samtools \
      stats \
      --threads 2 \
      --reference Homo_sapiens_assembly38.fasta \
      HCC1395_tumor.recalibrated.bam \
      > HCC1395_tumor.stats
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS":
      samtools: $(echo $(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*$//')
  END_VERSIONS

Command exit status:
  1

Command output:
  (empty)

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/777fc61a1b27e147577c963a5e4ee0

Container:
  292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`