succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta) 5m 27s 2m 20s 2m 45s 22s 386.9 MB 106% 3.0 GB 1.5 GB 0 bytes 1.5 GB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip) 1m 36s 1m 34s - - 10.9 MB 98% 9.8 MB 30.0 MB 0 bytes 30.0 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip) 2m 24s 2m 9s 2s 13s 11.0 MB 107% 100.1 MB 345.6 MB 0 bytes 345.6 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip) 2m 14s 2m 10s - - 10.8 MB 110% 8.3 MB 33.1 MB 0 bytes 33.1 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip) 2m 20s 2m 11s 2s 7s 10.9 MB 106% 101.6 MB 387.4 MB 0 bytes 387.5 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38.bed) 2m 20s 2m 13s - - 5.3 MB 110% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38;null) 2m 26s 2m 24s - - 6.2 MB 109% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr15_81322899-81322948;null) 7s 6s - - 6.1 MB 104% 1.5 MB 392.9 KB 0 bytes 396.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null) 8s 7s 1s 0s 6.0 MB 117% 1.6 MB 444.9 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr22_46626800-46626961;null) 7s 6s - - 3.2 MB 70% 352.4 KB 77.4 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_40123127-40123212;null) 7s 6s - - 6.2 MB 101% 1.5 MB 424.9 KB 0 bytes 432.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr9_114905828-114905899;null) 7s 6s - - 6.2 MB 96% 1.6 MB 439.2 KB 0 bytes 444.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 2m 45s 2m 34s 8s 3s 256.3 MB 376% 117.1 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 34s 18s 56s 20s 270.8 MB 142% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 58s 57s 0s 0s 0 bytes 100% 105.8 KB 38.3 KB 0 bytes 40.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 42s 15s 0s 26s 15.2 MB 101% 28.2 MB 208.5 KB 0 bytes 152.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (659_91-N1-BDNA-1_A23FG3YLT4_1) 1m 54s 1m 46s 6s 2s 416.0 MB 248% 97.1 MB 697.4 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (659_b6L-N1-BDNA-1_A23FG3YLT4_1) 48s 40s 7s 1s 399.3 MB 245% 97.1 MB 698.7 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (659_bD1-N1-BDNA-1_A23FG3YLT4_1) 1m 49s 1m 42s 6s 1s 435.5 MB 244% 97.1 MB 698.7 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (659_bHx-N1-BDNA-1_A23FG3YLT4_1) 1m 16s 1m 6s 6s 4s 411.4 MB 231% 97.1 MB 698.6 KB 0 bytes 700.0 KB 1
12222 items found |
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